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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G18450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | DBB | ||||||||
Protein Properties | Length: 329aa MW: 35044 Da PI: 5.4616 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.1 | 1.3e-06 | 78 | 118 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC+ C H+ H+ ONIVA04G18450.1 78 VQCDVCAAEAASVFCCADEAALCDACDRRVHSAnklagkHR 118 68**************************9996566777776 PP | |||||||
2 | zf-B_box | 25.7 | 2.3e-08 | 134 | 167 | 2 | 35 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35 +++ C+ ++ek+ lfC++++ lC++C ++ H ONIVA04G18450.1 134 KPPLCDICQEKRGFLFCKEDRAILCRECDVAVHT 167 6899***************************994 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.025 | 75 | 122 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-13 | 75 | 122 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.28E-7 | 78 | 122 | No hit | No description |
Pfam | PF00643 | 2.2E-5 | 78 | 119 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.4E-14 | 133 | 180 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.168 | 133 | 180 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-6 | 134 | 167 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.13E-9 | 136 | 180 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MVALPVLSSG DGPSGDTKSD LVTWIGGDCS KEGLWQDSDE LNGDASGNQG GRKARSRRRA 60 RWRCQKWLGS NVLSRAKVQC DVCAAEAASV FCCADEAALC DACDRRVHSA NKLAGKHRRF 120 SLLQPLASSS SAQKPPLCDI CQEKRGFLFC KEDRAILCRE CDVAVHTTSE LTRRHGRFLL 180 TGVRLSSAPM DSPAPSEEEE EEAGEDYSCS PSSVAGTAAG SASDGSSISE YLTKTLPGWH 240 VEDFLVDEAT AAAAAASSSS DGLFQGGLLA QIGGVPDGYA AWAGREQLHS GVAVAADERA 300 SRERWVPQMN AEWGAGSKRP RASPPCLYW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061333 | 0.0 | AK061333.1 Oryza sativa Japonica Group cDNA clone:006-303-A11, full insert sequence. | |||
GenBank | CT830169 | 0.0 | CT830169.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA102E21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634023.1 | 1e-173 | B-box zinc finger protein 20 isoform X2 | ||||
Swissprot | Q9LQZ7 | 9e-54 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A0E0H3P2 | 0.0 | A0A0E0H3P2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G18450.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-27 | salt tolerance homolog2 |