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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G18420.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 436aa MW: 46094.8 Da PI: 8.1676 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60 | 2.9e-19 | 351 | 385 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l ONIVA04G18420.2 351 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 385 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.018 | 345 | 381 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.8E-18 | 345 | 399 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.52E-14 | 348 | 408 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-15 | 349 | 383 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.02E-15 | 350 | 407 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 351 | 376 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.1E-17 | 351 | 385 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MLHQTLIPSS TLSFPSSAPL SPPLLFASNA AATAAQGSNT SRSSSAMPSY AHHHSSLDGK 60 MDALKSSCRS EEAADEGAAA APSAWGMVER DGFSVEDLLD LEEFCEAEKD AAEENEQALA 120 VVAAPEEEKS KDDSQPSSVV TYELVAPPPP PPEIVDLPAH DVEELEWVSR IMDDSLSELP 180 PPPQPPASVV ASLAARPPQP RQLQRRPQDG AYRALPPASY PVRTPTICAL STEALVPVKA 240 KRSKRSRATA WSLSGAPPFS DSTSSSSTTT TSSCSSSASF SSFSPLLKFE WHPLGGTSDL 300 PDDHLLPPGK KSKHGKNGKN KPKKRGRKPK QLPPHPSGAA ASAPAPGDRR CSHCGVQKTP 360 QWRAGPEGAK TLCNACGVRY KSGRLLPEYR PACSPTFVSA IHSNSHRKVL EMRRKKEVGS 420 GLLTAAAAAA PAVASF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK060574 | 0.0 | AK060574.1 Oryza sativa Japonica Group cDNA clone:001-023-D04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636682.1 | 0.0 | GATA transcription factor 6 | ||||
TrEMBL | A0A0E0H3N8 | 0.0 | A0A0E0H3N8_ORYNI; Uncharacterized protein | ||||
STRING | OS04T0539500-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 1e-39 | GATA transcription factor 5 |