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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G18420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 475aa MW: 50766.1 Da PI: 7.5009 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.9 | 3.3e-19 | 390 | 424 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l ONIVA04G18420.1 390 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 424 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.8E-18 | 384 | 438 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.018 | 384 | 420 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.85E-14 | 387 | 447 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-15 | 388 | 422 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.21E-14 | 389 | 446 | No hit | No description |
Pfam | PF00320 | 3.4E-17 | 390 | 424 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 390 | 415 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MLHQTLIPSS TLSFPSSAPL SPPLLFASNA AATAAQGSNT SRSSSAMPSY AHHHSSLGDD 60 EEENRRFLSL CLLGFWNFGN LWFLLCVYVG AFWTEKDGKM DALKSSCRSE EAADEGAAAA 120 PSAWGMVERD GFSVEDLLDL EEFCEAEKDA AEENEQALAV VAAPEEEKSK DDSQPSSVVT 180 YELVAPPPPP PEIVDLPAHD VEELEWVSRI MDDSLSELPP PPQPPASVVA SLAARPPQPR 240 QLQRRPQDGA YRALPPASYP VRTPTICALS TEALVPVKAK RSKRSRATAW SLSGAPPFSD 300 STSSSSTTTT SSCSSSASFS SFSPLLKFEW HPLGGTSDLP DDHLLPPGKK SKHGKNGKNK 360 PKKRGRKPKQ LPPHPSGAAA SAPAPGDRRC SHCGVQKTPQ WRAGPEGAKT LCNACGVRYK 420 SGRLLPEYRP ACSPTFVSAI HSNSHRKVLE MRRKKEVGSG LLTAAAAAAP AVASF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119611 | 0.0 | AK119611.1 Oryza sativa Japonica Group cDNA clone:002-117-F12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636682.1 | 0.0 | GATA transcription factor 6 | ||||
TrEMBL | A0A0E0H3N7 | 0.0 | A0A0E0H3N7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G18420.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1417 | 33 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 4e-39 | GATA transcription factor 5 |