![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA04G18220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 265aa MW: 28094.7 Da PI: 7.7969 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 209.4 | 1.3e-64 | 26 | 217 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......................lleelk 76 eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+ aa+ + + + ++e+ ONIVA04G18220.1 26 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQAllsptsphglldevpsfqapaslMTEQAS 119 579*******************************************998665555554555555566668999*99999999988765444444 PP YABBY 77 veeenlksnvekeesastsvssekl......senedeevpr.vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 + ++++s +++ ++ +++++ ++++ + p+ +p ++r ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahf ONIVA04G18220.1 120 PNVSSITSSNSSCA---NNAPATSMasaankATQREPQQPKnAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHF 210 44444433332222...22222222233323333333444415569************************************************ PP YABBY 164 Pkihfgl 170 P+ihfgl ONIVA04G18220.1 211 PHIHFGL 217 *****97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.3E-71 | 26 | 217 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.75E-7 | 159 | 210 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.8E-4 | 169 | 209 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 8.14E-5 | 171 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 265 aa Download sequence Send to blast |
MSSAPETFSL DHLSQHHQQQ PPPLAEQEQL CYVHCNFCDT ILAVGVPCSS LFKTVTVRCG 60 HCANLLSVNL RGLLLPAAAS TANQLPFGQA LLSPTSPHGL LDEVPSFQAP ASLMTEQASP 120 NVSSITSSNS SCANNAPATS MASAANKATQ REPQQPKNAP SANRTSEKRQ RVPSAYNRFI 180 KDEIQRIKAS NPDITHREAF SAAAKNWAHF PHIHFGLMPD QGLKKTGIQS QDGAGECMLF 240 KDGLYAAAAA AAAATAASSM GVTPF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB274017 | 0.0 | AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds. | |||
GenBank | AK070205 | 0.0 | AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634596.1 | 0.0 | protein YABBY 5 | ||||
Swissprot | Q01JG2 | 0.0 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 0.0 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A0E0H3L6 | 0.0 | A0A0E0H3L6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G18220.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-56 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|