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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G12010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23545.3 Da PI: 8.052 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.4 | 2.5e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA+ELSvLCda++ vi+fs++gk+ye + ONIVA04G12010.1 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVFSPHGKIYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 60.2 | 8.4e-21 | 80 | 174 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +s+e++ + qq++ L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le +++iRs+K++l+ ++ie l++ke l+ +n L+++ ONIVA04G12010.1 80 QAESNEQNIPQVIQQDVLLLRQEVDLLQNSLRYMYGErDISHMNLGELQSLESNLEVWVNNIRSTKMQLMSREIEMLKNKEGILKAANDILQER 173 4555777788999***********************978****************************************************998 PP K-box 98 l 98 + ONIVA04G12010.1 174 I 174 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.3E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-28 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.89E-38 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-24 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-23 | 83 | 174 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.344 | 89 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVFSP HGKIYELATN 60 GNMQGLIERY KNKSNLPEAQ AESNEQNIPQ VIQQDVLLLR QEVDLLQNSL RYMYGERDIS 120 HMNLGELQSL ESNLEVWVNN IRSTKMQLMS REIEMLKNKE GILKAANDIL QERIIAQTSI 180 MDVGCNMMIP QVPFQLTTES NYYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-15 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 3e-15 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 3e-15 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 3e-15 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194477.1 | 1e-120 | MADS-box transcription factor 26-like | ||||
Refseq | XP_020194478.1 | 1e-120 | MADS-box transcription factor 26-like | ||||
Swissprot | A2YQK9 | 7e-77 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 7e-77 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A0E0H1C0 | 1e-149 | A0A0E0H1C0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XTV6 | 1e-149 | A2XTV6_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA04G12010.1 | 1e-150 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-58 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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