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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G11980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 158aa MW: 18511.8 Da PI: 9.2348 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.1 | 1.1e-13 | 10 | 38 | 2 | 30 |
---SHHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvL 30 rien rqv f+kRr g+lKKA+ELSvL ONIVA04G11980.1 10 RIENPVHRQVIFCKRRMGLLKKAKELSVL 38 8***************************9 PP | |||||||
2 | K-box | 58.7 | 2.5e-20 | 64 | 148 | 14 | 97 |
K-box 14 aeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 qq++ L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le +++iRs+K++l+ ++ie l++ke l+ +n L+++ ONIVA04G11980.1 64 PMVIQQDVLFLRREVDLLQNSLRYMYGEkDINHMNLGELQSLESNLEVWVNNIRSTKMQLMSREIEMLKNKEGILKAANDILQER 148 45579**********************868**************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.6E-12 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.175 | 1 | 38 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-14 | 1 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-14 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-11 | 10 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-14 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.6E-24 | 59 | 149 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.583 | 64 | 156 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQVI FCKRRMGLLK KAKELSVLNM EGLIERYKCN LPEAQVESTE 60 QNIPMVIQQD VLFLRREVDL LQNSLRYMYG EKDINHMNLG ELQSLESNLE VWVNNIRSTK 120 MQLMSREIEM LKNKEGILKA ANDILQERVL LAINSCIL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288322.1 | 2e-78 | MADS-box transcription factor 26-like | ||||
Swissprot | Q2QW55 | 2e-49 | MAD33_ORYSJ; MADS-box transcription factor 33 | ||||
TrEMBL | A0A0E0H1B6 | 1e-109 | A0A0E0H1B6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G11980.1 | 1e-110 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-36 | AGAMOUS-like 12 |