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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G10110.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | E2F/DP | ||||||||
Protein Properties | Length: 423aa MW: 47112.8 Da PI: 4.8043 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 82.8 | 2.7e-26 | 93 | 158 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++ll+++++gi++ln++ak L dv ++RRiYDi+NVLe+ +liekk kn+irw+g ONIVA04G10110.4 93 RYDNSLGLLTRKFINLLKQAQDGILDLNDAAKIL---DV--RKRRIYDITNVLEGTGLIEKKLKNRIRWRG 158 689*******************************...**..9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.0E-27 | 90 | 159 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.6E-33 | 93 | 158 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.7E-17 | 93 | 156 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 4.0E-23 | 95 | 158 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 6.65E-39 | 168 | 272 | No hit | No description |
SuperFamily | SSF144074 | 6.02E-30 | 169 | 272 | No hit | No description |
Pfam | PF16421 | 2.2E-27 | 173 | 272 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MSSGGGRPPA AQHIVRSVRQ RFVPLPPPLA RAPFAAAPGD YHRFAAASRG GEIDEGIVIR 60 RTPLKRKTPC GESEAAESSE RSPGNPSTPA SSRYDNSLGL LTRKFINLLK QAQDGILDLN 120 DAAKILDVRK RRIYDITNVL EGTGLIEKKL KNRIRWRGSD DSGTNLDSDI SCLKTEVENL 180 YIQEQALDRS ISEIREKMEE LTEDESNHRW LFVTEDDING LPCFQNEALI AIKGPRGTTV 240 EVPDPDEAGD YLQRRYRILL RSTMGPIDIY LLLPQKKLSD EHPYYIISQY KKMEELGETA 300 TPPRHASVVE PPSIATEAGH SSKQTMPLNV QQDIQETPEL NASRAFGRMK KITPSDVDTD 360 ADYWLLTDDD ISITHMWTTA SEMQWDQIDT NDFLAEEISD TPCALNQPSA AASEPTGVGF 420 NHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 2e-23 | 86 | 158 | 2 | 73 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 150 | RKRRIYDITNVLEGTGLIEKKLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067581 | 0.0 | AK067581.1 Oryza sativa Japonica Group cDNA clone:J013113N12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637107.1 | 0.0 | transcription factor E2FA isoform X2 | ||||
TrEMBL | A0A0E0H0K7 | 0.0 | A0A0E0H0K7_ORYNI; Uncharacterized protein | ||||
STRING | ORUFI04G13340.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 9e-94 | E2F transcription factor 3 |