PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G10110.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

E2F/DP

Protein Properties

Length: 564aa MW: 62040.7 Da PI: 5.1096

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G10110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	82.3	4.1e-26	93	158	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++ll+++++gi++ln++ak L dv ++RRiYDi+NVLe+ +liekk kn+irw+g ONIVA04G10110.1 93 RYDNSLGLLTRKFINLLKQAQDGILDLNDAAKIL---DV--RKRRIYDITNVLEGTGLIEKKLKNRIRWRG 158 689*****************************.....9***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	7.7E-27	90	159	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	8.77E-17	93	156	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	5.6E-33	93	158	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Pfam	PF02319	6.1E-23	95	158	IPR003316	E2F/DP family, winged-helix DNA-binding domain
CDD	cd14660	4.90E-41	168	275	No hit	No description
SuperFamily	SSF144074	1.31E-30	169	274	No hit	No description
Pfam	PF16421	8.5E-28	173	272	IPR032198	E2F transcription factor, CC-MB domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MSSGGGRPPA AQHIVRSVRQ RFVPLPPPLA RAPFAAAPGD YHRFAAASRG GEIDEGIVIR 60 RTPLKRKTPC GESEAAESSE RSPGNPSTPA SSRYDNSLGL LTRKFINLLK QAQDGILDLN 120 DAAKILDVRK RRIYDITNVL EGTGLIEKKL KNRIRWRGSD DSGTNLDSDI SCLKTEVENL 180 YIQEQALDRS ISEIREKMEE LTEDESNHRW LFVTEDDING LPCFQNEALI AIKGPRGTTV 240 EVPDPDEAGD YLQRRYRILL RSTMGPIDIY LVSQYKKMEE LGETATPPRH ASVVEPPSIA 300 TEAGHSSKQT MPLNVQQDIQ ETPELNASRA FGRMKKITPS DVDTDADYWL LTDDDISITH 360 MWTTASEMQW DQIDTNDFLA EEISDTPCAL NQPSAAASEP TGSVKEMSES VIEVARYAPP 420 YLARSSFACS VLDFLRPNSR PYFSVISSAV WASPSLVSCT AESRHRGGRE EARSRGCLRC 480 CSNRCWCLAV GAAGLARRRA PAAMEGPRAR MVYEGSERAR GRRRGGGEVN GDAEAGGESG 540 DREIEPPGLL VVVVFTGDIL VMDG

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MSSGGGRPPA AQHIVRSVRQ RFVPLPPPLA RAPFAAAPGD YHRFAAASRG GEIDEGIVIR  60
RTPLKRKTPC GESEAAESSE RSPGNPSTPA SSRYDNSLGL LTRKFINLLK QAQDGILDLN  120
DAAKILDVRK RRIYDITNVL EGTGLIEKKL KNRIRWRGSD DSGTNLDSDI SCLKTEVENL  180
YIQEQALDRS ISEIREKMEE LTEDESNHRW LFVTEDDING LPCFQNEALI AIKGPRGTTV  240
EVPDPDEAGD YLQRRYRILL RSTMGPIDIY LVSQYKKMEE LGETATPPRH ASVVEPPSIA  300
TEAGHSSKQT MPLNVQQDIQ ETPELNASRA FGRMKKITPS DVDTDADYWL LTDDDISITH  360
MWTTASEMQW DQIDTNDFLA EEISDTPCAL NQPSAAASEP TGSVKEMSES VIEVARYAPP  420
YLARSSFACS VLDFLRPNSR PYFSVISSAV WASPSLVSCT AESRHRGGRE EARSRGCLRC  480
CSNRCWCLAV GAAGLARRRA PAAMEGPRAR MVYEGSERAR GRRRGGGEVN GDAEAGGESG  540
DREIEPPGLL VVVVFTGDIL VMDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1cf7_A	1e-22	86	158	2	73	PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	150	RKRRIYDITNVLEGTGLIEKKLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269\|PubMed:11669580, ECO:0000269\|PubMed:11786543, ECO:0000269\|PubMed:11862494, ECO:0000269\|PubMed:11889041, ECO:0000269\|PubMed:11891240, ECO:0000269\|PubMed:12913157, ECO:0000269\|PubMed:15377755, ECO:0000269\|PubMed:16514015, ECO:0000269\|PubMed:19662336}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067581	0.0	AK067581.1 Oryza sativa Japonica Group cDNA clone:J013113N12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637107.1	0.0	transcription factor E2FA isoform X2
Swissprot	Q9FNY0	3e-92	E2FA_ARATH; Transcription factor E2FA
TrEMBL	A0A0E0H0K4	0.0	A0A0E0H0K4_ORYNI; Uncharacterized protein
STRING	ONIVA04G10110.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP625	37	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	2e-96	E2F transcription factor 3

Publications ? help Back to Top
Magyar Z, et al. Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes. EMBO J., 2012. 31(6): p. 1480-93 [PMID:22307083]