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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G09470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 89aa MW: 10422.5 Da PI: 4.44 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 46.8 | 8.4e-15 | 1 | 52 | 46 | 97 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +++lp +++ d++sslvyeA+ r+rdPvy +v+ i+ lq+q++ql+ +la ONIVA04G09470.1 1 MQELPVQQQGDTVSSLVYEANDRMRDPVYDCVRAISFLQNQVSQLQMQLAIG 52 68999*******************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.758 | 1 | 56 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.9E-13 | 1 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MQELPVQQQG DTVSSLVYEA NDRMRDPVYD CVRAISFLQN QVSQLQMQLA IGQGENLCIQ 60 MQHRDGNENE KNAREEEERE RREKREGNI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR855110 | 1e-144 | CR855110.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0502B11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624534.1 | 8e-42 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 3e-26 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0E0H0B6 | 1e-57 | A0A0E0H0B6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G09470.1 | 2e-58 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 9e-28 | LBD family protein |
Publications ? help Back to Top | |||
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