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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G06840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARR-B | ||||||||
Protein Properties | Length: 326aa MW: 36407.6 Da PI: 4.8317 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 27.7 | 5.9e-09 | 119 | 165 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 l Wtp L ++F++a+e LG + + l +m+v+ + ++++ HLQk+Rl ONIVA04G06840.1 119 LMWTPHLQKKFLHALEILG-EGQ----ISLMIMDVDNIDRKQISTHLQKHRL 165 78****************5.542....34789*******************7 PP | |||||||
2 | Response_reg | 27.2 | 2e-10 | 15 | 97 | 2 | 82 |
EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS Response_reg 2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 +++d+++ ++ ++++ + ++ v++++++ +al+ l+++ ++l+l D++m +m+G+e+lk re +++++ i v+++++ ONIVA04G06840.1 15 MVIDEDKCHADSTCSMICtQLNF-CVTVFTSPIKALDFLQNQAegVHLVLADVQMEEMNGFEFLKVARELHKSIQAISVGDKST 97 6776666666665555554999*.***************999999********************9999999999998888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 6.69E-11 | 12 | 90 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 11.519 | 13 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 2.3E-11 | 14 | 92 | No hit | No description |
Pfam | PF00072 | 6.6E-7 | 15 | 97 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.93E-8 | 15 | 90 | No hit | No description |
SuperFamily | SSF46689 | 5.11E-10 | 113 | 169 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-10 | 114 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-8 | 119 | 165 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MAQNEGIPNG TLSAMVIDED KCHADSTCSM ICTQLNFCVT VFTSPIKALD FLQNQAEGVH 60 LVLADVQMEE MNGFEFLKVA RELHKSIQAI SVGDKSTCAN EMNSFPENQK DGTKRKYYLM 120 WTPHLQKKFL HALEILGEGQ ISLMIMDVDN IDRKQISTHL QKHRLPLKKK LSKASFTKGS 180 NEDTSNPSAK NHLTCRTMTL QPHPYTNQPA ETTMQIHSED VEHDDVYDAM RRALQDGTAF 240 DESKYSSDPF SNEDEDVVGD GYADKANAID SSGDHYQVAV VLTTPHNVDY TQEIMNKVTT 300 SDDVQVTRGG KATVSRLVDY SDSDSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691407.1 | 1e-121 | PREDICTED: two-component response regulator ORR29-like | ||||
Swissprot | Q7XKS9 | 0.0 | ORR28_ORYSJ; Two-component response regulator ORR28 | ||||
TrEMBL | A0A0E0GZE1 | 0.0 | A0A0E0GZE1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G06840.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5920 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59570.1 | 1e-09 | G2-like family protein |