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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G04160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 128aa MW: 13806.7 Da PI: 9.9458 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.8 | 8.1e-20 | 21 | 55 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++ ONIVA04G04160.1 21 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 55 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.848 | 15 | 51 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.6E-15 | 15 | 65 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.33E-13 | 18 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.5E-16 | 19 | 56 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.62E-13 | 20 | 56 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 21 | 46 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.5E-17 | 21 | 55 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MGSTDRKVVG IGVAEEGRRS CVECRATTTP MWRSGPTGPR SLCNACGIRY RKKRRQDLGL 60 DLNQPQKQEH GEVIPEVKDS NSNSNSGSGN SSSNLQVVPK RRLLMGVEEA ALLLMTLSSP 120 SASTLLHG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT132400 | 0.0 | BT132400.1 Oryza sativa clone RRlibD00393 mRNA sequence. | |||
GenBank | CT829626 | 0.0 | CT829626.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA214F08, full insert sequence. | |||
GenBank | CT841570 | 0.0 | CT841570.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102C07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621366.1 | 6e-75 | GATA transcription factor 23 | ||||
TrEMBL | A0A0E0GYD2 | 5e-88 | A0A0E0GYD2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G04160.1 | 8e-89 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6721 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 3e-18 | GATA transcription factor 23 |