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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G43670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28643.4 Da PI: 5.2341 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.8 | 8.9e-26 | 18 | 68 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ ++rqvtfskRr+g lKKA+EL vLCda+v v++fs +gkl++++s ONIVA03G43670.1 18 KRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCS 68 79***********************************************96 PP | |||||||
2 | K-box | 58.9 | 2.1e-20 | 89 | 179 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslke.LqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++ e++ e+++L++ei++L+ ++R+ GedL+s s + L qL+ qLe+sl+k+ ++K+el+ +q+e+++++ + ++e+n+ L +++ ONIVA03G43670.1 89 TNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDaLSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMMS 179 456678999****************************97655*******************************************988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-38 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.726 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.17E-37 | 11 | 71 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-27 | 11 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-26 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.4E-24 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-26 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-26 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.4E-20 | 90 | 178 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.677 | 93 | 184 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDRRRGEVAM GRGKIEMKRI EDATRRQVTF SKRRAGFLKK ANELAVLCDA QVGVVVFSDK 60 GKLFDFCSPP VICFTVMRSP PENTRLQETN RDDEQMVMEI TRLRNEIDQL EASLRRQTGE 120 DLSSVSTVDA LSQLQLQLES SLSKVHARKD ELMSQQLEDM RRMHQTVHEQ NNFLCRMMSE 180 NWHSENWQSP GSGEASAMEA LTMLPPPAAA TTAAEAFNCF FPEEEKGVAA SSTLLQLWPQ 240 PHDGDQPDLR LW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-15 | 10 | 89 | 1 | 87 | MEF2 CHIMERA |
6byy_B | 1e-15 | 10 | 89 | 1 | 87 | MEF2 CHIMERA |
6byy_C | 1e-15 | 10 | 89 | 1 | 87 | MEF2 CHIMERA |
6byy_D | 1e-15 | 10 | 89 | 1 | 87 | MEF2 CHIMERA |
6bz1_A | 2e-15 | 10 | 89 | 1 | 87 | MEF2 CHIMERA |
6bz1_B | 2e-15 | 10 | 89 | 1 | 87 | MEF2 CHIMERA |
6bz1_C | 2e-15 | 10 | 89 | 1 | 87 | MEF2 CHIMERA |
6bz1_D | 2e-15 | 10 | 89 | 1 | 87 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY174093 | 0.0 | AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882177.1 | 1e-106 | MADS-box transcription factor 30 isoform X7 | ||||
Swissprot | Q655V4 | 1e-108 | MAD30_ORYSJ; MADS-box transcription factor 30 | ||||
TrEMBL | A0A0E0GWR9 | 0.0 | A0A0E0GWR9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G43670.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 2e-36 | MIKC_MADS family protein |