![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA03G41820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 969aa MW: 105573 Da PI: 5.2234 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130 | 8.5e-41 | 151 | 228 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adl+ +++yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ ONIVA03G41820.1 151 ACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHNRRRRKTRP 228 5**************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.4E-34 | 145 | 213 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.394 | 149 | 226 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-38 | 150 | 230 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-30 | 152 | 225 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 6.47E-8 | 750 | 856 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.2E-7 | 754 | 859 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.63E-8 | 756 | 856 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 969 aa Download sequence Send to blast |
MEAARVGAQS RHLYGGGLGE PDMDRRDKRL FGWDLNDWRW DSDRFVATPV PAAEASGLAL 60 NSSPSSSEEA GAASVRNVNA RGDSDKRKRV VVIDDDDVED DELVENGGGS LSLRIGGDAV 120 AHGAGVGGGA DEEDRNGKKI RVQGGSPSGP ACQVEGCTAD LTGVRDYHRR HKVCEMHAKA 180 TTAVVGNTVQ RFCQQCSRFH PLQEFDEGKR SCRRRLAGHN RRRRKTRPEV AVGGSAFTED 240 KVSSYLLLGL LGVCANLNAD NAEHLRGQEL ISGLLRNLGA VAKSLDPKEL CKLLEACQSM 300 QDGSNAGTSE TANALVNTAV AEAAGPSNSK MPFVNGDQCG LASSSVVPVQ SKSPTVATPD 360 PPACKFKDFD LNDTYGGMEG FEDGYEGSPT PAFKTTDSPN CPSWMHQDST QSPPQTSGNS 420 DSTSAQSLSS SNGDAQCRTD KIVFKLFEKV PSDLPPVLRS QILGWLSSSP TDIESYIRPG 480 CIILTVYLRL VESAWKELSD NMSSYLDKLL NSSTGNFWAS GLVFVMVRHQ IAFMHNGQLM 540 LDRPLANSAH HYCKILCVRP IAAPFSTKVN FRVEGLNLVS DSSRLICSFE GSCIFQEDTD 600 NIVDDVEHDD IEYLNFCCPL PSSRGRGFVE VEDGGFSNGF FPFIIAEQDI CSEVCELESI 660 FESSSHEQAD DDNARNQALE FLNELGWLLH RANIISKQDK VPLASFNIWR FRNLGIFAME 720 REWCAVTKLL LDFLFIGLVD IGSQSPEEVV LSENLLHAAV RMKSAQMVRF LLGYKPNESL 780 KGTAETFLFR PDAQGPSKFT PLHIAAATDD AEDVLDALTN DPGLVGINTW RNARDGAGFT 840 PEDYARQRGN DAYLDMVEKK INKHLGKGHV VLGVPSSIHP VITDGVKPGE VSLEIGMTVP 900 PPAPRCNACS RQALMYPNST ARTFLYRPAM LTVMGIAVIC VCVGLLLHTC PKVYAAPTFR 960 WELLERGPM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-31 | 145 | 225 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK069847 | 0.0 | AK069847.1 Oryza sativa Japonica Group cDNA clone:J023034C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631511.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X1 | ||||
Swissprot | Q75LH6 | 0.0 | SPL6_ORYSJ; Squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A0E0GW16 | 0.0 | A0A0E0GW16_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G41820.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1998 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60030.1 | 0.0 | squamosa promoter-binding protein-like 12 |
Publications ? help Back to Top | |||
---|---|---|---|
|