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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G40780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 411aa MW: 40799.1 Da PI: 9.248 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.9 | 1.1e-38 | 111 | 171 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ ONIVA03G40780.1 111 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 171 56789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-37 | 98 | 169 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.609 | 115 | 169 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-32 | 115 | 169 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 117 | 153 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MVFSSVPAVY LDPPNWNQQQ QQAHHGQLPS GGNGGGGGGG GGGVDAHHHH HHQLPPMPPH 60 HGGLMAPRPD MVAAAVAASG GGGGGGGPTG GTAVRPGSMT ERARLAKIPQ PEPGLKCPRC 120 ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT RGGALRNVPV GGGCRRNKRT KSSKSSSSTS 180 AAGSASATGG TSSSTSSTAT GGSSSAAAAA AMMPPQAQLP FLASLHHPLG GGDHYSSGAS 240 RLGFPGLSSL DPVDYQLGGG AAAAAAIGLE QWRLPQIQQL PFLSRNDAMP PPMSGIYPFD 300 AEAAADAAGF AGQLLAGTKV PGSSGLITQL ASVKMEDSNA QSAAMNSSPR EFLGLPGNLQ 360 FWGGGNGAGP GGNGDGATGG SGAGVAPGGG GSGGGWADLS GFNSSSSGNI L |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00483 | DAP | Transfer from AT5G02460 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628807.1 | 1e-171 | dof zinc finger protein DOF2.4 isoform X2 | ||||
TrEMBL | A0A0E0GVP1 | 0.0 | A0A0E0GVP1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G40780.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4893 | 29 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 1e-40 | DNA binding with one finger 2.4 |