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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G34920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 271aa MW: 29027.7 Da PI: 6.5108 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.7 | 2e-15 | 166 | 202 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ ONIVA03G34920.1 166 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 202 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.0E-9 | 33 | 68 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 15.548 | 33 | 68 | IPR010399 | Tify domain |
Pfam | PF06200 | 7.5E-13 | 35 | 67 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.493 | 95 | 137 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.5E-16 | 95 | 135 | IPR010402 | CCT domain |
SMART | SM00401 | 6.0E-10 | 160 | 214 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.9E-14 | 164 | 204 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.14E-10 | 164 | 214 | No hit | No description |
Pfam | PF00320 | 3.8E-13 | 166 | 202 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 166 | 193 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.21E-13 | 166 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MAAEPPADGR DPPADDGAAG DGAVESAAAE ALLSAASEQL TLVYQGEVYV FDPVPPQKVQ 60 AVLLVLGGSD MPPGLVSMAV PTTFDEKSTT VAARRVASLM RFREKRKERC FDKKIRYSVR 120 KEVAQKMKRR KGQFAGRADF GDGSCSSAPC GSTANGEDDH IRETHCQNCG ISSRLTPAMR 180 RGPAGPRSLC NACGLMWANK GTLRSPLNAP KMTVQHPADL SKTGDTDDSK ANLCAEHNQT 240 TMKTDTEMVP EQEQKADVLP PTKEEDSMAT S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288076 | 0.0 | AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632019.1 | 0.0 | GATA transcription factor 19 isoform X1 | ||||
Swissprot | B8AR30 | 0.0 | GAT19_ORYSI; GATA transcription factor 19 | ||||
Swissprot | Q0DNU1 | 0.0 | GAT19_ORYSJ; GATA transcription factor 19 | ||||
TrEMBL | A0A0E0GTG6 | 0.0 | A0A0E0GTG6_ORYNI; Uncharacterized protein | ||||
STRING | OS03T0734900-00 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA03G34920.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-55 | ZIM-LIKE 2 |