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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G34380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 593aa MW: 61968.7 Da PI: 7.4822 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.6 | 2.4e-24 | 213 | 257 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e ONIVA03G34380.1 213 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 257 79****************************************986 PP | |||||||
2 | QLQ | 57.4 | 4.5e-20 | 147 | 183 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++ ONIVA03G34380.1 147 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 183 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-11 | 147 | 183 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.0E-14 | 148 | 182 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.087 | 148 | 183 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.455 | 213 | 257 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-20 | 214 | 256 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MAAVDGGGGG ELGGGGLLGS RLMKHGRGNA GDQEHGWRPP AKQARGGDAS SAAAAVAAAA 60 AVSEAVKVAA PFLLGASCSP GHGGEQMLSF SSSASSCSSG GGGAAVAAAA AAGGAMPLYY 120 GTPASCSGLS SVSLSSSMQG AMARVRGPFT PSQWIELEHQ ALIYKYLAAN SPVPHSLLIP 180 IRRSLTSPYS PAYFGSSTLG WGSFQLGYSG SADPEPGRCR RTDGKKWRCS RDAVADQKYC 240 ERHMNRGRHR SRKHVEGQPG HAAKAMPAAV AAAAASATQP STPAAHSGGA VAGLAINHQH 300 QQMKNYAANT ANPCSLQYSR DLANKHNESE QVQDSDSLSM LTSISTRNTG SLFPFSKQHN 360 PFEVSNSRPD FGLVSPDSLM SSPHSSLENV NLLTSQSLNE QQSSVSLQHF VDWPRTPAQG 420 ALAWPDAEDM QAQRSQLSIS APMASSDLSS ASTSPIHEKL MLSPLKLSRE YSPIGLGFAA 480 NRDEVNQGEA NWMPMFRDSL MGGPLGEVLT KNNNMEARNC LSESLNLLND GWDSSSGFDS 540 SPVGVLQKTT FGSVSSSTGS SPRLENHSVY DGNSNLRDDL GSVVVNHPSI RLV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073578 | 0.0 | AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628630.1 | 0.0 | growth-regulating factor 6 | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A0E0GTA2 | 0.0 | A0A0E0GTA2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G34380.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 5e-53 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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