![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA03G32760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 372aa MW: 39855.6 Da PI: 7.0732 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 87.5 | 1.7e-27 | 84 | 178 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +fqr+wse+De+ +LqGl+ + +g d++ fy+ +++s+ + +++sql+eK+rrLK+Kf+++++++++g +p+ ++hd+++++l++++ ONIVA03G32760.1 84 KFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPSPYTRSQLSEKLRRLKNKFRGMSTRVARGLDPARLAPHDRDVLHLCSRL 176 79*******************.556878888*************************************************************** PP DUF573 96 Wg 97 W+ ONIVA03G32760.1 177 WD 178 *8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.3E-24 | 85 | 178 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 372 aa Download sequence Send to blast |
MASDQTLPVP VSVELPPAAP NPPDPTAPLL PHADDPSAPP AAARKLPVKR RSPPPRPSSP 60 SSSDPASSDP AAKQQPQQPP PPFKFQRIWS ESDELRFLQG LLGCGAQGLV FPRDLNVFYD 120 RFSESMPSPY TRSQLSEKLR RLKNKFRGMS TRVARGLDPA RLAPHDRDVL HLCSRLWDPA 180 NAATSPFAAA GDASSGNKRR RAAPRAGPLM PPDPSGDSNS HDYNGGISAG TPGAFGDGHG 240 GEEMMYLEQE SGHFGYHGDV AIAADGSLDG IVKVQPETLP ALPSIGDIAV HSENGNGKAV 300 VPRSNEHHMA NAVLDIFEEC LREVKANGIT YGANVNGGTE LARRWRAQRI DELDVLSRRL 360 RLLVEDAAAA GR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC087181 | 0.0 | AC087181.9 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0018H01 map R1538, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT833899 | 0.0 | CT833899.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056B15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628567.1 | 0.0 | probable transcription factor At5g28040 | ||||
TrEMBL | A0A0E0GSK8 | 0.0 | A0A0E0GSK8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G32760.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8695 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04930.2 | 2e-09 | DNA-binding storekeeper protein-related transcriptional regulator |