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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G29050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 689aa MW: 72648 Da PI: 4.8613 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 101.7 | 7e-32 | 83 | 184 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++vkk+++g+w vtkle+ ONIVA03G29050.1 83 FYNVYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKNevspvaagsgedSGRGRRTRAVTRVGCKAMIRVKKQDNGRWAVTKLET 176 ********************************************************99999********************************* PP FAR1 84 eHnHelap 91 HnH+l+p ONIVA03G29050.1 177 AHNHPLVP 184 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.6E-30 | 83 | 184 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MERGGGGGGG GGGGVMGSEQ GTPESEMGDG DNDSVDYAAE MEADAAGNGS AAAAAYAARA 60 GVYDGVDPFE GMEFDDEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSIM SRQFVCAKEG 120 FRTYRGKNEV SPVAAGSGED SGRGRRTRAV TRVGCKAMIR VKKQDNGRWA VTKLETAHNH 180 PLVPPNQAHC LRPHKPLSEC GKQRQFGIPR NGGMLLAIEP PPPPISPPVP QTSELVNCIN 240 MPETIDEFEV NFKALISKVG PGNSEWLYSV YNCRQHWVPV YLRDTFFGDE SSKEDLCREA 300 LRYAEEGASS VEVYIVAMQA LQEAANKVNM AKRGIGQVAP NAPLAVMPIA AQLPAEGFRN 360 VPEISFNQRK KRKRNSNNKT TENSSNQLMY LQQPVNFLFV APGTSSGPQG PSQIVAAVPV 420 SSSAPHGQTS SANHPSDGNT TSCSVAAQKN SDLSNYSGSA PSLGNVVPEG EIKSSGFASQ 480 IKESHELSQG NGNKGNNVNM ASSTSSPQLV TVPVGLCLPS MDSSKISADA INSTNSGSMI 540 SNGNVSFGLC QSQSTNADPR STPEGSSIRA AAIAAGARIA SPSDAASIIK AAQSKGAIHI 600 RPGEGVPNYL KPLAPQPLSS LPPGSIPNSV HPSSSHAQPG QCSFGDSAAA KDAIFGSTDS 660 SDDDEYDEDD DTDDNDEDEG ITGDEVEQE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 368 | 373 | RKKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120058 | 0.0 | AK120058.1 Oryza sativa Japonica Group cDNA clone:J013001C08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631605.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | A0A0E0GR78 | 0.0 | A0A0E0GR78_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G29050.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-26 | FAR1-related sequence 5 |