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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G28660.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 21129.1 Da PI: 9.24 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 258.6 | 1e-79 | 4 | 161 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +++ ++e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ +q+l+ae+h l+++lk++++++++n++++ s+s++ ONIVA03G28660.3 4 QIVPAPEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDH--------LQDNLKMHNMSFRENYSEYGSSSRY 89 67889*******************************************************9........899********************** PP YABBY 96 vssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++ s+n++e++ + +rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl ONIVA03G28660.3 90 GRVPMMfSKNDTEHMLH----VRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161 **99988999*****98....9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.8E-73 | 9 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.09E-8 | 101 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.1E-5 | 107 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSAQIVPAPE HVCYVHCNFC NTILAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLVQALP 60 AEDHLQDNLK MHNMSFRENY SEYGSSSRYG RVPMMFSKND TEHMLHVRPP EKRQRVPSAY 120 NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHFPNIHFG LGSHESSKKL DEAIGAPSPQ 180 KVQRLY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274014 | 0.0 | AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds. | |||
GenBank | AF098753 | 0.0 | AF098753.1 Oryza sativa clone FIL2 unknown mRNA. | |||
GenBank | AK070479 | 0.0 | AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence. | |||
GenBank | EU846982 | 0.0 | EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880111.1 | 1e-138 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 1e-139 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A0E0GR31 | 1e-138 | A0A0E0GR31_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NYX3 | 1e-138 | A0A0E0NYX3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G28820.1 | 1e-138 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-57 | YABBY family protein |