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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G28660.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 258aa MW: 28883.1 Da PI: 11.2838 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 119.1 | 7e-37 | 4 | 109 | 2 | 114 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +++ ++e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ +q+l+ae+h l+++lk++++++++n++++ s+s++ ONIVA03G28660.2 4 QIVPAPEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDH--------LQDNLKMHNMSFRENYSEYGSSSRY 89 67889*******************************************************9........899********************** PP YABBY 96 vssekl.senedeevprvpp 114 ++ ++ s+n++e++ +v + ONIVA03G28660.2 90 GRVPMMfSKNDTEHMLHVRQ 109 **9998899*****998765 PP | |||||||
2 | YABBY | 124.8 | 1.2e-38 | 167 | 233 | 102 | 170 |
YABBY 102 senedeev.prvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s ++++ + +r+p PPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl ONIVA03G28660.2 167 SASSRRAArSRPP---PPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 233 3333333303334...59**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.4E-64 | 9 | 233 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-8 | 174 | 227 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 6.9E-5 | 182 | 227 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSAQIVPAPE HVCYVHCNFC NTILAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLVQALP 60 AEDHLQDNLK MHNMSFRENY SEYGSSSRYG RVPMMFSKND TEHMLHVRQS PAAAARVRHR 120 PHVVVVVAPS PLSSSSLWSR CRRSRPPSLL SVASTARIRP VTRRAVSASS RRAARSRPPP 180 PPEKRQRVPS AYNRFIKEEI RRIKANNPDI SHREAFSTAA KNWAHFPNIH FGLGSHESSK 240 KLDEAIGAPS PQKVQRLY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274014 | 1e-179 | AB274014.1 Oryza sativa Japonica Group OsYABBY2 mRNA for OsYABBY2 protein, complete cds. | |||
GenBank | AF098753 | 1e-179 | AF098753.1 Oryza sativa clone FIL2 unknown mRNA. | |||
GenBank | AK070258 | 1e-179 | AK070258.1 Oryza sativa Japonica Group cDNA clone:J023044A02, full insert sequence. | |||
GenBank | AK070479 | 1e-179 | AK070479.1 Oryza sativa Japonica Group cDNA clone:J023050P10, full insert sequence. | |||
GenBank | EU846982 | 1e-179 | EU846982.1 Oryza sativa Japonica Group clone KCS205G10 YABBY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795817.1 | 1e-76 | protein YABBY 2-like isoform X1 | ||||
Swissprot | Q10FZ7 | 2e-75 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A0E0GR30 | 0.0 | A0A0E0GR30_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G28660.2 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 6e-24 | YABBY family protein |