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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G27230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 449aa MW: 46805.2 Da PI: 10.639 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 111.6 | 3.5e-35 | 48 | 102 | 5 | 59 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ ONIVA03G27230.1 48 REQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRP 102 579*************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 27.559 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-30 | 49 | 101 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-22 | 50 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MPGQVMEAAL QQLPASMASG SLLLPPACIQ HPLPAAAAAS GGVGGSSREQ CPRCASHDTK 60 FCYYNNYNTS QPRHFCRACR RYWTLGGSLR NVPIGGSTRK RPRPPVRRPP VHFAAAAAPP 120 HHHHHHHGGP LTPPPATSSS SQQAGLLGSL FALGAAPLLE GRVGVGFDLG LGLPGPGHHH 180 AVAGGGGPAA AVATSSSSSA AAPLLWPTGL LDSSSNNAET WRMAAGGMWP EFTAAAAQNI 240 RLVIDIGDTT IQVPLNGPTV VQNIGRQAAA AVAGDSSAGG VSEKTGGAGG GGGEEWMQEQ 300 DGLLCMRGRR CGRRGGCLPR PRDWFAALLA ADPAAAAVTR DQAGKAMLYL IVNTCTFATS 360 LAVLPDAVRR RRRLRVEEGH READHQHDDG RRAVRRGDVR ALRRRRLPAH GPFVGTVVAA 420 VTVVVVRCNL ALPFRGGDAG HGCSWVSRL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 103 | KRPRP |
2 | 390 | 406 | RRAVRRGDVRALRRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC107206 | 0.0 | AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880163.1 | 1e-111 | dof zinc finger protein MNB1A-like | ||||
TrEMBL | A0A0E0GQJ8 | 0.0 | A0A0E0GQJ8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G27230.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12575 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 4e-25 | DOF zinc finger protein 1 |