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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G20120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 434aa MW: 46008.3 Da PI: 8.1996 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.5e-39 | 88 | 147 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCy+nny+++qPr+fCk C+ryWt+GGa+rnvPvG+grrknk++ ONIVA03G20120.1 88 PDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKNA 147 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-38 | 75 | 145 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-31 | 90 | 146 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.574 | 92 | 146 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 94 | 130 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MGECRGGGDG LIKLFGKTIP VQPDAKDVQQ HSGSSSSSTE SDVQETAAVA VADPSPRSEV 60 VDGESPPQPG GEAASHQQQQ KEMKLKKPDK ILPCPRCSSM DTKFCYFNNY NVNQPRHFCK 120 HCQRYWTAGG AMRNVPVGAG RRKNKNATAA AHFLHRVRAC AAAAAMPAAP HDATNATVLS 180 FGGGGGGHDA LPVTLDLADK MTRLGKEGLV AHARNADAAA ACSEVSSNRD DEQIGNTVAK 240 PANGLQQHPP PPHHHHHSAM NGGGIWPYYT SGIAIPIYPA APAYWGCMIP PPGAWSLPWP 300 ATVQSQAISS SSPPTSATPS VSSFTLGKHP REGGDHEARD HHGNGKVWVP KTIRIDNADE 360 VARSSIRSLF AFRGGDKVDD NNDDDGTSVH KLATTVFEPK RDGKTAKHPA ITSLPLLHTN 420 PVALTRSATF QEGS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615013.1 | 0.0 | cyclic dof factor 1 | ||||
TrEMBL | A0A0E0GN10 | 0.0 | A0A0E0GN10_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8BGR5 | 0.0 | B8BGR5_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA03G20120.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 5e-46 | cycling DOF factor 2 |