PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G11650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 674aa    MW: 74818.2 Da    PI: 6.0179
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G11650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.82.8e-2670160188
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                      +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ +    +++++ r+ tr+gCka+l++kk   +kw+vtk+ + HnH 
  ONIVA03G11650.1  70 DFYSKYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRDCEnlhVDQKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKIHNHG 160
                      6*******************************************999998899999**********************************5 PP

2FAR186.73.4e-27207300290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      fY +YA+  GF+ r+s+  +s+r+++i++r+ vCskeg+re + +k      ++++r+r+ tr+gCka+++vk++++gkw+v+k+e+eHnH+l 
  ONIVA03G11650.1 207 FYINYARVNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRARKditdgGKTTKRPRMITRVGCKAMIVVKRMNSGKWMVSKFEKEHNHSLL 300
                      9******************************************9999999999999***********************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2370160IPR004330FAR1 DNA binding domain
PfamPF031011.1E-24207300IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MEGVVTSSVG EPNQDNEPRD SSIELPRVIT DMETSAMHDP EAQKLIGHEA DTELTPYEGM  60
EFESEDAARD FYSKYARHAG FRIRISRYTR SRRDNSIISR RIVCSKEGFH ETRDCENLHV  120
DQKQQARVGT RVGCKAMLMI KKFGPDKWVV TKFIKIHNHG PVPPRKPHAG EHHDCDLMEN  180
PHSIEVDPID EPVEGMEFES EEAAKLFYIN YARVNGFRAR ISRYCRSRRD NSIISRQIVC  240
SKEGFREVRA RKDITDGGKT TKRPRMITRV GCKAMIVVKR MNSGKWMVSK FEKEHNHSLL  300
SSRAVPITSN DSSREVIDFA ATSNDPNEVK AEGCSTGIQC NSTDSLTVLY NHLCQEAIKF  360
AKEGSVTEEI YHVAMNALKE AAEKVSEVKR SHPTMSQSKH EVMQMETMSA SQCSNDDKQK  420
TMTPQLKFLQ EPSPSLVLIP TNLLTHSSSN CADNIPLSCD LTINETTVAI PAIPLTLYMP  480
IMKNPTGDSA ECSPDIFPFS WNADGQYRLL AAPIEAVPIS YRPAEPIQQP HGSFPNSGPL  540
PGFLPKLYKR GKGPNSLVHA TALACGARVV PPEEAASLIK AIESKIRSGG ATIAKLPSSS  600
LTPLIPEVAS MSSSSEDDEE NDHSEPLMAS VEHNCHDQSS EEMKLEADPP SELETEAENC  660
SAQPENENNG PTHC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1342340.0AC134234.3 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0019J12, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630687.10.0uncharacterized protein LOC4332292
TrEMBLA0A0E0GJW30.0A0A0E0GJW3_ORYNI; Uncharacterized protein
STRINGONIVA03G11650.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90313345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.18e-31FAR1 family protein