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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G05970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 158aa MW: 17149.1 Da PI: 6.2235 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 41.1 | 2.5e-13 | 30 | 64 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C Cg + Tp++Rrgp+g +tLCnaCG+ ++k ONIVA03G05970.1 30 CLRCGISAnaTPHMRRGPEGRRTLCNACGIAWAKD 64 5667766667**********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 4.56E-9 | 22 | 65 | No hit | No description |
SMART | SM00401 | 1.2E-5 | 24 | 82 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.7E-11 | 29 | 64 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.9E-11 | 31 | 64 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MQFEDGGDVH VGAGEGEDGG RVTVDELTRC LRCGISANAT PHMRRGPEGR RTLCNACGIA 60 WAKDTSVSNS HQQALHGGAQ GSQGYAPLAG IQQQQFIGNF RLNHETDNQI HVPALLKGRR 120 FPTADELCCL LAIWNKFSTE DNQTILQSGF SVDERTIV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067807 | 4e-99 | AK067807.1 Oryza sativa Japonica Group cDNA clone:J013120L22, full insert sequence. | |||
GenBank | AK101197 | 4e-99 | AK101197.1 Oryza sativa Japonica Group cDNA clone:J033030K10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633159.1 | 1e-38 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0E0GHR5 | 1e-114 | A0A0E0GHR5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G05970.1 | 1e-115 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15039 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 8e-12 | GATA-type zinc finger protein with TIFY domain |