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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G03810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | E2F/DP | ||||||||
Protein Properties | Length: 444aa MW: 48429.9 Da PI: 10.6409 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 65.7 | 6.2e-21 | 219 | 279 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr++++k ++ek+e+ g++t+ne ++ d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg ONIVA03G03810.1 219 GRGLRQFSMK---VCEKVESkGRTTYNE--QQY---DEKNIRRRVYDALNVLMAMEIISK-DKKEIQWKG 279 689*******...*****999******9..566...8899********************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-9 | 213 | 243 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.6E-25 | 217 | 279 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 9.1E-19 | 220 | 279 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.21E-16 | 220 | 280 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.7E-22 | 244 | 284 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 6.50E-37 | 284 | 381 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 2.38E-35 | 286 | 398 | No hit | No description |
SMART | SM01138 | 2.4E-72 | 286 | 442 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 8.7E-35 | 287 | 415 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MRPPGTALGF GLISGAGSRR VTEPKPPNFI RKKIKIKRKK QKRKEEKRSS SPRLCPPSRR 60 FLISFSPSNL PPLCRFRVSA LQLLPNSGPR FARSRPPMVS GVAHRPDDDG GRAASTFQRP 120 PQPAGARPSL ATPPPSGGAQ SASTSGGSAG SPSSRSEQHV PAAAGMAAGA AAASTPISEN 180 TFLRLNDLDI HGDDAPSSQA PTSKKKKRGA RAVGPDKGGR GLRQFSMKVC EKVESKGRTT 240 YNEQQYDEKN IRRRVYDALN VLMAMEIISK DKKEIQWKGL PRTSINDIED LQTELVGLKS 300 RIEKKNTYLQ ELQDQLIQRN EQLYGSGNIP SGGVALPFIL VQTRPHATVE VEISEDMQLV 360 HFDFNSTPFE LHDDSFVLKA MSSCGEEQID GIHDLISNGG ESSSMPNIYR QQVQQPARST 420 NGTARLPSSP PIPGILKGRV KHEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-25 | 211 | 284 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 43 | RKKIKIKRKKQKRK |
2 | 36 | 47 | KRKKQKRKEEKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137635 | 0.0 | AC137635.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628001.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-115 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A0E0GGX6 | 0.0 | A0A0E0GGX6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA03G03810.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-112 | Transcription factor DP |