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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G00490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | BES1 | ||||||||
Protein Properties | Length: 697aa MW: 78422.8 Da PI: 5.3719 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 124.7 | 1.1e-38 | 46 | 128 | 3 | 84 |
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaags 84 ++r + +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+neV++AL+reAGwvv +DGtt++ +s+ + + + ++ ONIVA03G00490.1 46 GRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINEVIAALAREAGWVVLPDGTTFPSSSSSVsQPPPTQQQ 128 57888899************************************************************877766322333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.2E-35 | 47 | 131 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 2.09E-187 | 254 | 693 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.8E-205 | 257 | 691 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 1.5E-114 | 263 | 681 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.3E-76 | 294 | 308 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.3E-76 | 315 | 333 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.3E-76 | 337 | 358 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 341 | 349 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00842 | 1.6E-8 | 420 | 429 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 1.3E-76 | 430 | 452 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.3E-76 | 503 | 522 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.3E-76 | 537 | 553 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.3E-76 | 554 | 565 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.3E-76 | 572 | 595 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 1.6E-8 | 575 | 585 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 1.3E-76 | 612 | 634 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 1.6E-8 | 663 | 677 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00842 | 1.6E-8 | 678 | 692 | IPR001371 | Glycoside hydrolase, family 14B, plant |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MQQQQQAMEE DGVKEEEEEY YLEEEDEGEE ETRPPLQQQQ QQVGLGRRGR AREEKERTKL 60 RERQRRAITA RILAGLRRHG NYNLRVRADI NEVIAALARE AGWVVLPDGT TFPSSSSSVS 120 QPPPTQQQLQ AAEPELSELE AKYRRVASVP TIERLPSLGL IIIIMISSPA LFFLLQPGRP 180 SIAAPPLPSS PAPPLRGISI SPVAARPISS LRSSSSIRII SPPHALPDPL LSLPSMDPQE 240 VPDLLPPRPP ERDFAGTPYV PVYVMLPLGV VNGNGEVVDA DVLVGQLRVL KAAGVDGVMV 300 DCWWGNVEAH RPQEYNWTGY KRLFHMIREL KLKLQVVMSF HECGGNVGDD VSIPLPHWVT 360 EIGRSNPDIY FTDRAGRRNT ECLSWGIDKE RVLQGRTGVE VYFDYMRSFR VEFDEYFEDG 420 IISEIEIGLG ACGELRYPSY PAKHGWKYPG IGEFQCYDRY LQKSLRRAAE ARGHTIWARA 480 PDSAGHYNSE PNLTGFFSDG GDYDSYYGRF FLNWYSQVLV DHADRVLMLA RLAFEGSDIA 540 VKVSGVHWWY KTASHAAELT AGFYNPCNRD GYASIAAVLK KHGAALNFTC VELRTMDQHE 600 VFPEAFADPE GLVWQVLNAA WDAGIPVASE NALPCYDRDG FNKILENAKP LNDPDGRHLL 660 GFTYLRLTKV LFERANFLEF ERFVKRMHGE AVLDLQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1bya_A | 1e-158 | 259 | 690 | 11 | 444 | BETA-AMYLASE |
1byb_A | 1e-158 | 259 | 690 | 11 | 444 | BETA-AMYLASE |
1byc_A | 1e-158 | 259 | 690 | 11 | 444 | BETA-AMYLASE |
1byd_A | 1e-158 | 259 | 690 | 11 | 444 | BETA-AMYLASE |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070300 | 0.0 | AK070300.1 Oryza sativa Japonica Group cDNA clone:J023048N01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459849.2 | 0.0 | beta-amylase 2, chloroplastic | ||||
Swissprot | O80831 | 0.0 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | A0A0E0GFN0 | 0.0 | A0A0E0GFN0_ORYNI; Beta-amylase | ||||
STRING | ONIVA03G00490.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2141 | 36 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 0.0 | beta-amylase 7 |
Publications ? help Back to Top | |||
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