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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G40360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 22457.6 Da PI: 7.9346 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.9 | 3.5e-38 | 21 | 121 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrr+C+++Cv+apyf +eq +++fa++hk+FGasn +kll++lp +r +a+ +++yeA+ar+rdPvyG+v+ i++lqqq++ l+a+ ONIVA02G40360.1 21 PCGACKFLRRRCVPECVFAPYFSSEQgAARFAAIHKVFGASNASKLLSHLPVADRCEAVVTITYEAQARLRDPVYGCVAQIFALQQQVAILQAQ 114 7***********************9989****************************************************************** PP DUF260 94 lallkee 100 l +++++ ONIVA02G40360.1 115 LMQARAQ 121 *999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.951 | 20 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-37 | 21 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAGATAAGAA AAAAGTGAGS PCGACKFLRR RCVPECVFAP YFSSEQGAAR FAAIHKVFGA 60 SNASKLLSHL PVADRCEAVV TITYEAQARL RDPVYGCVAQ IFALQQQVAI LQAQLMQARA 120 QLACGIQSSS HSPVSWPDSG SISALLRQDM ARRPPGGALD DCFGGGGALL PELMAAGFKD 180 DVAAVQMQQH CSKAVDAGEL QYLAQAMMRS TSNYSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-39 | 11 | 125 | 1 | 117 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-39 | 11 | 125 | 1 | 117 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00309 | DAP | Transfer from AT2G42430 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064187 | 0.0 | AK064187.1 Oryza sativa Japonica Group cDNA clone:002-104-C02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626197.1 | 1e-155 | LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 2e-59 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A0D9Z098 | 1e-154 | A0A0D9Z098_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GEZ6 | 1e-154 | A0A0E0GEZ6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NMY5 | 1e-154 | A0A0E0NMY5_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XB42 | 1e-154 | A2XB42_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1P5M2 | 1e-154 | I1P5M2_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6K713 | 1e-154 | Q6K713_ORYSJ; LOB domain protein-like | ||||
STRING | OGLUM02G38740.1 | 1e-155 | (Oryza glumipatula) | ||||
STRING | ORUFI02G39110.1 | 1e-155 | (Oryza rufipogon) | ||||
STRING | OS02T0820500-01 | 1e-155 | (Oryza sativa) | ||||
STRING | ONIVA02G40360.1 | 1e-155 | (Oryza nivara) | ||||
STRING | ORGLA02G0327800.1 | 1e-155 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10599 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 6e-45 | lateral organ boundaries-domain 16 |