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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G38990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 418aa MW: 43831.3 Da PI: 5.626 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.1 | 5.2e-18 | 335 | 368 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C+ kTp+WR gp g+ktLCnaCG++y++ + ONIVA02G38990.1 335 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 368 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.19E-14 | 328 | 391 | No hit | No description |
SMART | SM00401 | 1.6E-15 | 329 | 379 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.082 | 329 | 365 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.4E-14 | 333 | 366 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.35E-14 | 334 | 391 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 335 | 360 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-15 | 335 | 368 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MAGVGFVEDM LREQSLLEAT CGDLFDHIDD LLDFPKEESA ADVLLLDAPA PGSPLSSRII 60 GGHATMAAAP PPPPQMMALP PPPAPAKDDA SALFDAAGAL GAEVFDRKDA HIGPCDELDM 120 DMAQLEWLSG LFDDGTIPHE PSFPGVNCAA PIKASALTAN AGVVLPDKAE EALFRSSSPI 180 SVLEHSGFNV ATNGGSSSSS SSSASSSSES FSGSGRAWSA PVSPRPEPPV LVIPARARSK 240 RSRPSAFPAV RGAPAATETT ILVPTPMYSS TSSHSDPESI AESNPHPPPM KKKKKAKKPA 300 APAAASDAEA DADAADADYE EGGALALPPG TVRRCTHCQI EKTPQWRAGP LGPKTLCNAC 360 GVRYKSGRLF PEYRPAASPT FMPSIHSNSH KKVVEMRQKA TRTADPSCDL LQYIRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT828965 | 0.0 | CT828965.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA219J10, full insert sequence. | |||
GenBank | CT828966 | 0.0 | CT828966.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA222D18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626107.1 | 0.0 | GATA transcription factor 11 | ||||
Refseq | XP_015626108.1 | 0.0 | GATA transcription factor 11 | ||||
TrEMBL | A0A0D9YZV5 | 0.0 | A0A0D9YZV5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0CST7 | 0.0 | A0A0E0CST7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GEF8 | 0.0 | A0A0E0GEF8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NMG8 | 0.0 | A0A0E0NMG8_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XAR7 | 0.0 | A2XAR7_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q948G4 | 0.0 | Q948G4_ORYSA; Putative GATA-1 zinc finger protein | ||||
STRING | OGLUM02G37730.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OMERI02G33730.1 | 0.0 | (Oryza meridionalis) | ||||
STRING | ORUFI02G38070.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA02G38990.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5169 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-36 | GATA family protein |