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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G36590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 315aa MW: 34882.9 Da PI: 7.7451 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.4 | 6.9e-25 | 90 | 133 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e ONIVA02G36590.1 90 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 133 79***************************************998 PP | |||||||
2 | QLQ | 60 | 6.6e-21 | 18 | 53 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l+yKy+a++ P+P++L++++++ ONIVA02G36590.1 18 PFTASQWQELEHQALIYKYMASGTPIPSDLILPLRR 53 9********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.4E-11 | 17 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.801 | 18 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.5E-15 | 18 | 51 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.573 | 90 | 134 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.5E-20 | 91 | 133 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MMMMSGRPSG GAGGGRYPFT ASQWQELEHQ ALIYKYMASG TPIPSDLILP LRRSFLLDSA 60 LATSPSLAFP PQPSLGWGCF GMGFGRKAED PEPGRCRRTD GKKWRCSKEA YPDSKYCEKH 120 MHRGKNRSRK PVEMSLATPP PPSSSATSAA SNTSGHATKE VHGEHAFFSD GTEREHHHAA 180 AGHGQWQFKQ LGMEPKQSTT PLFPGAGYGH TAASPYAIDL SKEDDDEKER RQQQQQQQQH 240 CFLLGADLRL EKPAGHDHAA AAQKPLRHFF DEWPHEKNSK GSWMGLEGET QLSMSIPMAA 300 NDLPITTTSR YHNDE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000269|PubMed:15295073}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA3) and submergence. {ECO:0000269|PubMed:10712532, ECO:0000269|PubMed:15295073}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF201895 | 0.0 | AF201895.1 Oryza sativa growth-regulating factor 1 (GRF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008786731.2 | 1e-108 | growth-regulating factor 1-like | ||||
Swissprot | A2XA73 | 1e-108 | GRF1_ORYSI; Growth-regulating factor 1 | ||||
TrEMBL | A0A0E0GDJ5 | 0.0 | A0A0E0GDJ5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G36590.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-52 | growth-regulating factor 5 |