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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G36150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GeBP | ||||||||
Protein Properties | Length: 317aa MW: 34604.9 Da PI: 4.4655 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 49.2 | 1.4e-15 | 135 | 226 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 +f+r+ws eDe+ +L +l + ++g + +da++ ++ +s++ + + +++l K+ LK++++ kk +g+ sk hd+ ++lsk+ ONIVA02G36150.1 135 AFHRIWSTEDEVRILEALAAHRREHG--SLPQTDALIATLAGSLDNTgYGRKELQGKVSTLKRRYESTAKK--KGDL--PSKGHDRRLYDLSKS 222 699******************99999..678899**********8653899******************99..5554..5799*********** PP DUF573 95 iWgs 98 +Wgs ONIVA02G36150.1 223 VWGS 226 **95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-21 | 136 | 225 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MAPKRPTPPP PPPPVASSEE TASGSDSDES EEEEEEESPL AQPAPVVSNK GAESDSSGEE 60 ESEEEEEEDL VRSSATKSRD PPQENREEDD SSDEEEDESS ESEKAEAPPP PPLNPAPKQG 120 AEGNGPKVSS PKRQAFHRIW STEDEVRILE ALAAHRREHG SLPQTDALIA TLAGSLDNTG 180 YGRKELQGKV STLKRRYEST AKKKGDLPSK GHDRRLYDLS KSVWGSEAAA AAANGTTTAP 240 REFGEMCELY PHLAEEVKLL EAAHPGLFKR DFGKLDDDKA HALDMKIKKQ RIAEISVVLR 300 RGDLTKEVTK VLTELVE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627254.1 | 1e-142 | probable tyrosine-protein phosphatase DSP2 | ||||
TrEMBL | A0A0E0GDD7 | 0.0 | A0A0E0GDD7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G36150.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6729 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66420.1 | 6e-09 | DNA-binding storekeeper protein-related transcriptional regulator |