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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G30970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 209aa MW: 22052.1 Da PI: 9.8369 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 80.2 | 1.8e-25 | 133 | 177 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +++pgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ ONIVA02G30970.1 133 EPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEA 177 699***************************************997 PP | |||||||
2 | QLQ | 52.3 | 1.7e-18 | 68 | 103 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 a+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k ONIVA02G30970.1 68 ALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 103 79*********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-5 | 67 | 103 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.225 | 68 | 103 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.7E-11 | 68 | 102 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.548 | 133 | 177 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.7E-21 | 134 | 176 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGEEKEADSP QPPSKLPRLS GADPNAGVVT MAAPPPPVGL GLGLGLGGDS RGERDVEASA 60 AAAHKATALT FMQQQELEHQ VLIYRYFAAG APVPVHLVLP IWKSVASSSF GPHRFPSLMG 120 LGNLCFDYRS SMEPDPGRCR RTDGKKWRCS RDVVPGHKYC ERHVHRGRGR SRKPVEASAA 180 ATPANNGGGG GIVFSPTSVL LAHGAARAT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT834761 | 0.0 | CT834761.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA033I10, full insert sequence. | |||
GenBank | FJ546694 | 0.0 | FJ546694.1 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 10 (GRF10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624932.1 | 1e-150 | growth-regulating factor 10 isoform X2 | ||||
Swissprot | Q6EPP9 | 1e-127 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | A0A0D9YWF4 | 1e-150 | A0A0D9YWF4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0CPS5 | 1e-150 | A0A0E0CPS5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GBD2 | 1e-150 | A0A0E0GBD2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NJ79 | 1e-150 | A0A0E0NJ79_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2X8B1 | 1e-150 | A2X8B1_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM02G28430.1 | 1e-151 | (Oryza glumipatula) | ||||
STRING | OMERI02G26250.1 | 1e-151 | (Oryza meridionalis) | ||||
STRING | ORUFI02G29340.1 | 1e-151 | (Oryza rufipogon) | ||||
STRING | ONIVA02G30970.1 | 1e-151 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 8e-37 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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