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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G28330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | DBB | ||||||||
Protein Properties | Length: 270aa MW: 28381.6 Da PI: 5.3295 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.3 | 1.1e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC+ C H+ H+ ONIVA02G28330.1 4 QCDVCAAEAASVFCCADEAALCDACDRRVHRAnklagkHR 43 7*****************************7677777776 PP | |||||||
2 | zf-B_box | 23.9 | 8.4e-08 | 62 | 94 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 ++ C+ ++ek+ lfC++++ lC++C + H ONIVA02G28330.1 62 APLCDICQEKRGFLFCKEDRAILCRECDVPVHT 94 689*************************99884 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.6E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.84 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.32E-6 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.4E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.684 | 60 | 107 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.1E-11 | 60 | 107 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.4E-6 | 62 | 102 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.76E-7 | 63 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLNP SASGRSPTST 60 TAPLCDICQE KRGFLFCKED RAILCRECDV PVHTASELTM RHSRYLLTGV RLSSEPAASP 120 APLSEEENSS SFCCSADDAV PAPAAPATSH GGSSGSSSIS EYLTTLPGWH VEDFLIDDAT 180 AEAAAAAAAT SSGISANGPP CQGVTRIGGL QESAGYPAWM AQQQLCCDGL VAGDASPASR 240 ERWVPQMYAD QLAAGSKRSR TSTASSYSYW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832305 | 0.0 | CT832305.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA032L03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623928.1 | 1e-164 | B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 3e-51 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A0E0GAF2 | 0.0 | A0A0E0GAF2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2X7T1 | 0.0 | A2X7T1_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA02G28330.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 2e-35 | DBB family protein |