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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G28320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 434aa MW: 45251 Da PI: 8.4996 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.1 | 2.9e-19 | 353 | 387 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l ONIVA02G28320.1 353 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 387 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.4E-18 | 347 | 401 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.308 | 347 | 383 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.8E-14 | 347 | 408 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-15 | 351 | 385 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.00E-14 | 352 | 394 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 353 | 378 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.1E-17 | 353 | 387 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MTHQALIPST PPSAFSPASH FLHASSSSSS PSLSSQAVVA AAAAAMSSFA HHHHGSLVEK 60 DGRMSALRSS LRPYEAAEEM AAAAAAGGPA AWGAVERGAG MMGDGFSVED LLDLEELCEV 120 DRDGGEQGEA AAAAAAAAAV EKERSSDSHG SSVVSYEPMP LLPPVMDLPA HDVEELEWVS 180 RIMDDSLAEL PLPQLPAAAA ALAACGKPQH RRPHEGAASA LLDPMRTPTI CALSTEALVP 240 VKSRRSKRSR ASVWSLSGAP LSDSTSSSST ATTSSCSSSA SFSPFLQYVD FPALVASDLL 300 DEQPRSKKSK HGKNGKQKPK KRGRKPKHQQ PPHLAAAAAA GGGALPATGD RRCSHCGVQK 360 TPQWRAGPEG AKTLCNACGV RYKSGRLLPE YRPACSPTFV SSLHSNSHRK VLEMRRKKET 420 PVIVAAAAPA VASF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109477 | 0.0 | AK109477.1 Oryza sativa Japonica Group cDNA clone:001-200-C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623357.1 | 0.0 | GATA transcription factor 6 | ||||
TrEMBL | A0A0E0GAF1 | 0.0 | A0A0E0GAF1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G28320.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1417 | 33 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-39 | GATA transcription factor 5 |