PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G28320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 434aa    MW: 45251 Da    PI: 8.4996
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G28320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19353387135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  ONIVA02G28320.1 353 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 387
                      *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.4E-18347401IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.308347383IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-14347408No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15351385IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.00E-14352394No hitNo description
PROSITE patternPS003440353378IPR000679Zinc finger, GATA-type
PfamPF003203.1E-17353387IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MTHQALIPST PPSAFSPASH FLHASSSSSS PSLSSQAVVA AAAAAMSSFA HHHHGSLVEK  60
DGRMSALRSS LRPYEAAEEM AAAAAAGGPA AWGAVERGAG MMGDGFSVED LLDLEELCEV  120
DRDGGEQGEA AAAAAAAAAV EKERSSDSHG SSVVSYEPMP LLPPVMDLPA HDVEELEWVS  180
RIMDDSLAEL PLPQLPAAAA ALAACGKPQH RRPHEGAASA LLDPMRTPTI CALSTEALVP  240
VKSRRSKRSR ASVWSLSGAP LSDSTSSSST ATTSSCSSSA SFSPFLQYVD FPALVASDLL  300
DEQPRSKKSK HGKNGKQKPK KRGRKPKHQQ PPHLAAAAAA GGGALPATGD RRCSHCGVQK  360
TPQWRAGPEG AKTLCNACGV RYKSGRLLPE YRPACSPTFV SSLHSNSHRK VLEMRRKKET  420
PVIVAAAAPA VASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094770.0AK109477.1 Oryza sativa Japonica Group cDNA clone:001-200-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623357.10.0GATA transcription factor 6
TrEMBLA0A0E0GAF10.0A0A0E0GAF1_ORYNI; Uncharacterized protein
STRINGONIVA02G28320.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5