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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G28110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 256aa MW: 27021.8 Da PI: 8.0253 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 216.5 | 8.4e-67 | 20 | 212 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl.deslkee.....................lleelk 76 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+ +a + ++ ++ l+e+ ONIVA02G28110.1 20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPAnQLHFGPSllsptsphglldevafqtpslLMEQAA 113 579********************************************99966665443204455555777789999777777766653233222 PP YABBY 77 veeenlksnvekeesastsvssekl....senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164 +++ + + +++++as+ +++++ + +++ e+p+ p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP ONIVA02G28110.1 114 SASLSSITGRSSSSCASNA-PAMQMppakPVQQEPELPKNAPasANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 206 2222222222233333333.3333478777888899999877678************************************************* PP YABBY 165 kihfgl 170 +ihfgl ONIVA02G28110.1 207 HIHFGL 212 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-70 | 21 | 212 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.71E-8 | 150 | 205 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.5E-4 | 161 | 204 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MSSSSSSSAV FPLDHLAAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL 60 LSVNLRGLLL PAPAPAPANQ LHFGPSLLSP TSPHGLLDEV AFQTPSLLME QAASASLSSI 120 TGRSSSSCAS NAPAMQMPPA KPVQQEPELP KNAPASANRP PEKRQRVPSA YNRFIKDEIQ 180 RIKAGNPDIS HREAFSAAAK NWAHFPHIHF GLMPDQGFKK TFKPQDGSED ILLKDSLYAA 240 AAAAAAAAAN MGVTPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274016 | 0.0 | AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds. | |||
GenBank | AK106784 | 0.0 | AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622736.1 | 0.0 | protein YABBY 4 | ||||
Swissprot | A2X7Q3 | 0.0 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 0.0 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A0D3F851 | 0.0 | A0A0D3F851_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YVL2 | 0.0 | A0A0D9YVL2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0CP17 | 0.0 | A0A0E0CP17_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GAC6 | 0.0 | A0A0E0GAC6_ORYNI; Uncharacterized protein | ||||
TrEMBL | I1P2J5 | 0.0 | I1P2J5_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM02G26190.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OMERI02G24350.1 | 0.0 | (Oryza meridionalis) | ||||
STRING | OS02T0643200-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA02G28110.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA02G0220100.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART02G25670.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 4e-61 | YABBY family protein |
Publications ? help Back to Top | |||
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