PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G28010.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 320aa    MW: 34461.8 Da    PI: 5.3456
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G28010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d++ ++G g+W++ +++ g+ R +k+c++rw +yl
  ONIVA02G28010.1 15 KGLWSPEEDQKLRDYILRHGHGCWSALPAKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding54.52.8e-1769113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g +++eE+e    +++ lG++ W++Iar+++ gRt++++k++w++yl
  ONIVA02G28010.1  69 GVFSPEEEETVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 113
                      789******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.961062IPR017930Myb domain
SuperFamilySSF466891.39E-2812109IPR009057Homeodomain-like
SMARTSM007175.3E-111464IPR001005SANT/Myb domain
PfamPF002491.2E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-221669IPR009057Homeodomain-like
CDDcd001675.57E-101862No hitNo description
PROSITE profilePS5129425.60363117IPR017930Myb domain
SMARTSM007172.5E-1567115IPR001005SANT/Myb domain
PfamPF002491.2E-1569113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2570117IPR009057Homeodomain-like
CDDcd001671.66E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGCKSCEKPR PNYRKGLWSP EEDQKLRDYI LRHGHGCWSA LPAKAGLQRN GKSCRLRWIN  60
YLRPGLKHGV FSPEEEETVM SLHAALGNKW SRIARHLPGR TDNEVKNYWN SYLKKRVESG  120
GGKTSQGPPT TPASAASSPA DSDDSHSLQQ KPHEPANSDS SEPAHESSSA SADSSCLTVT  180
TDHPPVSRPH AAVTPKVMFA DWLDMEYICG QVAAAPGLDA AGFAVVGGAA GDQQQQQQQQ  240
VMSQDGSVHQ ADGPSCGVDD SSLQQQQQEG FGGNGGCWDF QEQFDSIDQM QASGGGGGGG  300
FCDLLSMSDF DLWAELERTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26111193110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8372490.0EU837249.1 Oryza sativa Japonica Group clone KCS157B05 ATMYB4-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622999.10.0transcription factor MYB21
TrEMBLA0A0E0GAB50.0A0A0E0GAB5_ORYNI; Uncharacterized protein
STRINGONIVA02G28010.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.13e-57myb domain protein 19