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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G26290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | DBB | ||||||||
Protein Properties | Length: 256aa MW: 27393.6 Da PI: 5.1167 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.5 | 4.9e-07 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ + C ++ lC+ C +e H H++ p ONIVA02G26290.1 4 QCDACESAAAAVVCCADEAALCAACDVEVHAAnklagkHQRLP 46 7*******9*********************6678888898877 PP | |||||||
2 | zf-B_box | 27 | 9.1e-09 | 54 | 85 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ ++ek + +fC +++ l+C+dC + +H ONIVA02G26290.1 54 LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85 689**************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.025 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.4E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.5E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.902 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.6E-14 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-6 | 54 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.75E-7 | 55 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MKIQCDACES AAAAVVCCAD EAALCAACDV EVHAANKLAG KHQRLPLEAL SARLPRCDVC 60 QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGFASAS PCDGGSDAHD 120 SDHHAPPMGS SEHHHHHQQP APTVAVDTPS PQFLPQGWAL QKESSPPLGF QELEWFADID 180 LFHNQAPKGG AAAGRTTAEV PELFASQAAN DVAYYRPPTR TAAAAFTAAT GFRQSKKGRV 240 ELPDDEEDYL IVPDLG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB001885 | 0.0 | AB001885.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R1577. | |||
GenBank | AK061044 | 0.0 | AK061044.1 Oryza sativa Japonica Group cDNA clone:006-205-E01, full insert sequence. | |||
GenBank | AK104293 | 0.0 | AK104293.1 Oryza sativa Japonica Group cDNA clone:001-007-G06, full insert sequence. | |||
GenBank | AP004111 | 0.0 | AP004111.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1058_F07. | |||
GenBank | AP006438 | 0.0 | AP006438.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0030C08. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
GenBank | CU406559 | 0.0 | CU406559.1 Oryza rufipogon (W1943) cDNA clone: ORW1943S101P19, full insert sequence. | |||
GenBank | HQ858805 | 0.0 | HQ858805.1 Oryza sativa Japonica Group isolate UT1183 ORPHAN transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626533.1 | 1e-160 | B-box zinc finger protein 25 | ||||
TrEMBL | A0A0E0G9M2 | 0.0 | A0A0E0G9M2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2X702 | 0.0 | A2X702_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA02G26290.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3202 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31380.1 | 4e-42 | salt tolerance homologue |