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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G22250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 288aa MW: 31874.2 Da PI: 5.2925 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.6 | 9e-23 | 105 | 191 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e e+ + +++ + ++trt+Cka+++ + +++g+w+v++l+++HnH+la ONIVA02G22250.1 105 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGERLT--DANFNDPHTRTNCKAMVRFRVNNHGEWKVIRLVSDHNHNLA 191 7***************************************999877..9999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.4E-20 | 105 | 191 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MVNTDGEGGC EGGGGDPMCV DDNAIVAVET GVGVDQGIGS QHDDAGGDRV MEGQGAVTNS 60 GDEMGMRAYG DEAETEEAAT VHGSKEGTEE LLRKVVYSEE AAYKLYCDYG HRMGFSIRKG 120 KQSYFTGTKR IRTKDYFCSK EGLKEGERLT DANFNDPHTR TNCKAMVRFR VNNHGEWKVI 180 RLVSDHNHNL ARPEERHLLR SARSLIAGRS SSVETSKQDS LSCYISMART LAIGNADLQN 240 LVRHLKSRAN EDGNEELRKS LWETLESGEK ELEKYLENVT QYALSYAT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626433.1 | 1e-173 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0E0G826 | 0.0 | A0A0E0G826_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G22250.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-16 | FAR1-related sequence 5 |