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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G22000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 347aa MW: 35223.1 Da PI: 8.8926 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.3 | 6.9e-38 | 96 | 153 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s ONIVA02G22000.1 96 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 153 679***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-32 | 78 | 151 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-31 | 97 | 151 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.385 | 97 | 151 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 99 | 135 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MVFSSLPIFL DPPNWTQMQQ QPLQCLIGGG GGGGSDHHHL MPPPSGLAPL PSAAGAADTA 60 ASAPAAAAQQ QQPRPAVVSM SERARLARVP LPEPGTLRCP RCDSTNTKFC YFNNYSLSQP 120 RHFCKACRRY WTRGGALRNV PVGGGCRRNT KRSTKKSSSS SSRQGGGAGN AAAAATSSSS 180 TTSTSTTATT SSAAAAAAAA AADVIASMQA GGALLPHHLI GGLPSSAAAA AALEASLEGY 240 HHHHHGHGHQ LPFLQPPPFL QQGLHGYHFA DGDVAAGAAL ADGGFPRGVA SGLLAQLASV 300 KMEEHGTNNG GGFVGAHEQY WHGGNGGGGW PAEFLSGFSS SSSGNVL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288349 | 0.0 | AK288349.1 Oryza sativa Japonica Group cDNA, clone: J090023P19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619417.1 | 1e-138 | dof zinc finger protein DOF5.1 isoform X1 | ||||
TrEMBL | A0A0E0G7Z4 | 0.0 | A0A0E0G7Z4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G22000.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 5e-39 | Dof family protein |