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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G13670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GeBP | ||||||||
Protein Properties | Length: 512aa MW: 54808.7 Da PI: 10.21 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 43.2 | 1.1e-13 | 141 | 230 | 7 | 98 |
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 w+ +De+ +L l+ +++g++ ++++++ v +s++ k k s++ eK+rrLK++++ kk+++g + +ke+d +++ls+ iWg+ ONIVA02G13670.1 141 WTTDDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 230 **************999999954..699***********98865538***********************9965.567889**********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.5E-19 | 141 | 229 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MRRRRRRRRT PTLTPTPKLR KVGGGDEEGE EVEGDSSESE PEPEPVKKES AKKAKAEAKK 60 KRAAPEPAPS GKAKKAKPEK SSSAAAPEPA PSLGKSKKAA KAEAAKAAAA EPAPSTGKVR 120 KSKLAPEPSP SSKSGKALSR WTTDDEVKIL EVLVAHFKSH GTQLNVEGII AAVGDSLERK 180 SIKYSDMYEK VRRLKQRYEA TAKKVEHGGD LPAKEDDLRM YQLSSEIWGK NTKDAGNSSK 240 NKKGQAKKDK VSGDSKEAAK EDKVDEAAIA VNEKGGTLAE NKKGKTNKQK TGMETKVGSS 300 KEAALAASPT KGKKKGSHKD KLDEEAKSGT AKVTSTIATD DDDGTLGGSK REKAGKEELD 360 GDTHIVMPKE ATTTAASDDG TLVGSKKGKA DNGKLDGDTR SVMPKEATAG TQNGGILTGG 420 ENHKEKVDKD ANVPSIRREY AELQSLYPNL ASFVNGIEAQ HPCGSTFKRA FEFISDDKAC 480 TLESKIKKQK IAEVRMQLRL ADTKKEVANA LE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1 | 8 | RRRRRRRR |
2 | 2 | 8 | RRRRRRR |
3 | 4 | 9 | RRRRRT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626761.1 | 0.0 | neurofilament medium polypeptide | ||||
TrEMBL | A0A0E0G4Z4 | 0.0 | A0A0E0G4Z4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G13670.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7289 | 27 | 37 |