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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G04450.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Whirly | ||||||||
Protein Properties | Length: 286aa MW: 31098.4 Da PI: 10.4705 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 181.9 | 1.2e-56 | 95 | 232 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 v+k+kaal++++++p+f++l+sg +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+ ONIVA02G04450.2 95 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 188 9********************************************************************************************* PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+ ONIVA02G04450.2 189 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 232 *****************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.3E-72 | 84 | 251 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.26E-75 | 86 | 273 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.6E-57 | 95 | 229 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MAHSLMAVGP GRPDWAVGWP TCQARKRRHR CGWLPETSGA FPAAFFSSPI PFGIRFSVGN 60 ATAAESQGQR CSASPASSPP PPENTSGRKF ASYTVFKGKA ALSMQPILPS FSKLESGGSR 120 VNKNGSVMLT FFPAVGQRKY DYSKKQLFAL SPTEVGSLIS LGPAESCEFF HDPSMKSSHE 180 GQVKKSLSVT PLGNDSGYFL NITVLNNLQK TTERLSLPIS KAEFTVMRTA LSFALPHILG 240 WDQALTNHQP SPSPASKPRV ERPHPDSEWE RGKGTFIQRA TVTLLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 2e-71 | 86 | 248 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 2e-71 | 86 | 248 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 2e-71 | 86 | 248 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 2e-71 | 86 | 248 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061569 | 0.0 | AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence. | |||
GenBank | AK099479 | 0.0 | AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence. | |||
GenBank | AK104768 | 0.0 | AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence. | |||
GenBank | CT828510 | 0.0 | CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627387.1 | 1e-135 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 6e-72 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A0E0G1J5 | 0.0 | A0A0E0G1J5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G04450.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 2e-73 | WHIRLY 2 |