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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G03100.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 207aa MW: 22777.8 Da PI: 9.042 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 235.4 | 1.3e-72 | 6 | 177 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee......lleelkveeenlksnvekeesa 92 +eqvCyv+CnfCntilavsvP +s++++vtvrCGhCt+llsvnl+ ++ +a ++ +++ +e ++ + e ++ ++++ ONIVA02G03100.2 6 APAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQEsglsgcFRDQSGYPEFGFSAASSSSKLR 99 5689**********************************************99998665444444444777766777777777777777777777 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++s +++++ ++ rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl ONIVA02G03100.2 100 LPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 177 777888888988888888777889****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.4E-74 | 7 | 177 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.01E-8 | 122 | 171 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.3E-5 | 124 | 171 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSAQIAPAEQ VCYVHCNFCN TILAVSVPGN SMLNIVTVRC GHCTNLLSVN LRGLMHSAPA 60 LQDHHHHHLQ ESGLSGCFRD QSGYPEFGFS AASSSSKLRL PPAAAAMVSY SQQNQQLEQA 120 LHARPPEKRQ RVPSAYNRFI KEEIRRIKAN NPDISHREAF STAAKNWAHY PNIHFGLSPG 180 HEGGKKLVDV DPIPTAPSSK KIQGFYS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274018 | 0.0 | AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds. | |||
GenBank | AK104918 | 0.0 | AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence. | |||
GenBank | CT829139 | 0.0 | CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence. | |||
GenBank | FJ940195 | 0.0 | FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618575.1 | 1e-155 | protein YABBY 6 | ||||
Swissprot | Q2QM17 | 1e-156 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | A0A0E0BVE4 | 1e-153 | A0A0E0BVE4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FE72 | 1e-153 | A0A0E0FE72_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0G0X7 | 1e-153 | A0A0E0G0X7_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0RK59 | 1e-153 | A0A0E0RK59_ORYRU; Uncharacterized protein | ||||
TrEMBL | B7EXC7 | 1e-153 | B7EXC7_ORYSJ; YABBY protein | ||||
TrEMBL | B8BN25 | 1e-153 | B8BN25_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1R7Z4 | 1e-153 | I1R7Z4_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM12G20870.1 | 1e-154 | (Oryza glumipatula) | ||||
STRING | ORUFI12G21410.1 | 1e-154 | (Oryza rufipogon) | ||||
STRING | OS12T0621100-01 | 1e-154 | (Oryza sativa) | ||||
STRING | ORGLA12G0165000.1 | 1e-154 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-59 | YABBY family protein |