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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G52080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 141aa MW: 15499.7 Da PI: 9.6526 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.2 | 1.3e-19 | 24 | 58 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++ ONIVA01G52080.1 24 CADCHTTKTPLWRGGPGGPKSLCNACGIRYRKRRR 58 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.4E-16 | 18 | 81 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.703 | 18 | 54 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.28E-12 | 19 | 57 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-15 | 22 | 58 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.45E-14 | 23 | 58 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 24 | 49 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.1E-17 | 24 | 58 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MEMDSSSSPV DKVDPDECNG SKACADCHTT KTPLWRGGPG GPKSLCNACG IRYRKRRRAA 60 LGLDSAATAT EGAEQQQKKT KAKKEKAEEE EVTMELHTVG FRSKDAAVLK QRRRMRRRKC 120 LGEEERAAIL LMALSSGVIY A |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 57 | RKRRR |
2 | 110 | 116 | QRRRMRR |
3 | 111 | 118 | RRRMRRRK |
4 | 112 | 117 | RRMRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241643 | 0.0 | AK241643.1 Oryza sativa Japonica Group cDNA, clone: J065189M03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641177.1 | 7e-76 | GATA transcription factor 16 | ||||
TrEMBL | A0A0E0FZN2 | 1e-98 | A0A0E0FZN2_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8AA85 | 1e-98 | B8AA85_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA01G52080.1 | 2e-99 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 6e-25 | GATA transcription factor 16 |