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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G48300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CAMTA | ||||||||
Protein Properties | Length: 819aa MW: 93134.8 Da PI: 7.006 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 174.9 | 1.1e-54 | 12 | 130 | 1 | 118 |
CG-1 1 llke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 l++e k+rwlk++e+++iL+n++++ +t++++++p+sg+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++v++l+cyYah+++n+t ONIVA01G48300.1 12 LHQEvKSRWLKPKEVLQILQNHDRFIITHKTPHKPPSGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVDALNCYYAHADKNST 105 567889**************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 fqrr+yw+L+ ++++iv+vhy++v+ ONIVA01G48300.1 106 FQRRIYWMLDPAYDHIVFVHYRDVQ 130 **********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.932 | 9 | 135 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.6E-69 | 12 | 130 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.0E-48 | 16 | 129 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 1.22E-13 | 314 | 397 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 4.1E-5 | 314 | 399 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 0.00862 | 315 | 398 | No hit | No description |
CDD | cd00204 | 4.44E-11 | 489 | 611 | No hit | No description |
Pfam | PF13637 | 1.4E-9 | 521 | 573 | No hit | No description |
SuperFamily | SSF48403 | 1.15E-15 | 523 | 614 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.8E-16 | 524 | 614 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.255 | 524 | 584 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1.9E-4 | 552 | 581 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.541 | 552 | 584 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 8.169 | 706 | 734 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 819 aa Download sequence Send to blast |
MQQQQGFDTH RLHQEVKSRW LKPKEVLQIL QNHDRFIITH KTPHKPPSGA WFLFNRRVLR 60 YFRNDGYEWR KKKNGKTIAE AHERLKVDNV DALNCYYAHA DKNSTFQRRI YWMLDPAYDH 120 IVFVHYRDVQ EGSISVSALN DSSTSNQNGS GSRAEAQSSP GLTSELFAPC LNSCSPGSAE 180 EVSSQIMAIN NETNSVSQPD WVQHCNQAAL RKLKVQLSLE DREDHDVDAK DIPSNSEPIT 240 VYGIQNEEPG TCRNLADVFS GLEFSKENHP EETGLPFSST IDVLKNSDTW LEEDQIEAIL 300 HSASMIVTEN QWFNIREVSP EWSYCSESTK VIIAGDFLRD PSHGSWAIVF GDVKVHAEIV 360 QQGVIRCHTP CLDARKVTMY LIDENEKACS EARQFEFHNK PTKSVVCENR KPCREVHESE 420 LHQRPTESNN ELLLLFNYAQ LLFDGHVSEQ FLKFGLPFPN LECGLQVSPS EIMKGTSERL 480 NRDTTVNCVM EVLLNNKFEE WLFSKYEQNS EGNHFLPRQY HGVIHTIAAL GYNWALKLLL 540 NSGVLVNYRD ANGWTALHWA ARFGREETVV LLLDAGAAAG ALSDPTAQDP AAKTPASVAS 600 AYGFKGLSAY LSEAELIAHL HSLESKENGS SGDQISRVVG RISDTSAHAQ SGSDDQLALK 660 ESLGAMRYAV QAAGRIQTAF RRNNKQVFRI EKNFRCWKKR KEFLKIRKNV IKIQARVRAH 720 QQHNKYKELL RSVGILEKVM LRWYRKGVGL RGFHPGAIAM PIDEEDEDDI AKVFRKQRVE 780 TALNEAVSRV SSIIDSPVAR QQYRRMLEMH KQNKDDDEK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068932 | 0.0 | AK068932.1 Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence. | |||
GenBank | AK122110 | 0.0 | AK122110.1 Oryza sativa Japonica Group cDNA clone:J033127H20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649554.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
TrEMBL | A0A0E0FY53 | 0.0 | A0A0E0FY53_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G48300.2 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16940.1 | 1e-103 | calmodulin binding;transcription regulators |