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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G44390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 24157.6 Da PI: 7.7032 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.2 | 2.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr gilKKA E+SvLCdaev v+ifss gkly+y+s ONIVA01G44390.1 9 KRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 78.1 | 2.2e-26 | 71 | 167 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yq++sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L++++ ++ +k ++++ +++++ ++ e+e++ +L ONIVA01G44390.1 71 YQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDKLMDHWERHVRTDKMLEDENKLLAFKL 164 89999999*************************************************************************************9 PP K-box 95 rkk 97 +++ ONIVA01G44390.1 165 HQQ 167 997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.039 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-34 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.19E-43 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-15 | 82 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.222 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRSGILK KAREISVLCD AEVGVVIFSS AGKLYDYCSP 60 KTSLSRILEK YQTNSGKILW DEKHKSLSAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE 120 LIMIEEALDN GIVNVNDKLM DHWERHVRTD KMLEDENKLL AFKLHQQDIA LSGSMRDLEL 180 GYHPDRDFAA QMPITFRVQP SHPNLQENN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-20 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-20 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-20 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-20 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_A | 4e-20 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-20 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-20 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-20 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-20 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-20 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070894 | 0.0 | AK070894.1 Oryza sativa Japonica Group cDNA clone:J023072H23, full insert sequence. | |||
GenBank | AY551924 | 0.0 | AY551924.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS219 mRNA, complete cds. | |||
GenBank | RICOSMA | 0.0 | L37526.1 Oryza sativa MADS-box protein (MADS2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623988.1 | 1e-155 | MADS-box transcription factor 2 isoform X1 | ||||
Swissprot | Q40702 | 1e-156 | MADS2_ORYSJ; MADS-box transcription factor 2 | ||||
TrEMBL | A0A0D3EX30 | 1e-153 | A0A0D3EX30_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YIA5 | 1e-153 | A0A0D9YIA5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FWN0 | 1e-153 | A0A0E0FWN0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0JRV4 | 1e-153 | A0A0E0JRV4_ORYPU; Uncharacterized protein | ||||
TrEMBL | A2WXN3 | 1e-153 | A2WXN3_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NU03 | 1e-153 | I1NU03_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM01G43760.1 | 1e-154 | (Oryza glumipatula) | ||||
STRING | OS01T0883100-01 | 1e-154 | (Oryza sativa) | ||||
STRING | ONIVA01G44390.1 | 1e-154 | (Oryza nivara) | ||||
STRING | OPUNC01G38250.1 | 1e-154 | (Oryza punctata) | ||||
STRING | ORGLA01G0334300.1 | 1e-154 | (Oryza glaberrima) | ||||
STRING | OBART01G39540.1 | 1e-154 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3434 | 38 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 3e-74 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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