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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G43090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 329aa MW: 34761.5 Da PI: 4.5977 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.9 | 4.7e-38 | 32 | 89 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +a +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ ONIVA01G43090.1 32 AAPNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 89 5679***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-32 | 16 | 78 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.1E-32 | 33 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.854 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MLSSSHHEAM LPYAPRPPSL LVDRRYKQGA EAAPNCPRCD SPNTKFCYYN NYSLSQPRYF 60 CKGCRRYWTK GGSLRNVPVG GGCRKNRRGK SSSSARSAAD AVSSGRDAAF GHRFPGPVRP 120 DMVLEGMVGN PANPGQAMPD VAAAADGSTI DLAMLYAKFL NHPPTDAGLG AVTPESGGHV 180 DEAFDTFSAS SDLSPGILAA ASAQFDPNQD GFGEWSSPAS GNDPTSTATT ATTSMLCTDA 240 SVQAALGELN FAMDQSCFDS LGLPTDVAGA GSLSSWCSIV PSLSTWEEPK YDSLDSFPDD 300 AMSLHECMIG APDHDWSVDC QGLEALYMP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003270 | 0.0 | AP003270.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0505D12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646108.1 | 0.0 | dof zinc finger protein 4-like | ||||
TrEMBL | A0A0E0FW46 | 0.0 | A0A0E0FW46_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N5H1 | 0.0 | A0A0E0N5H1_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0VAX4 | 0.0 | A0A0P0VAX4_ORYSJ; Os01g0865800 protein | ||||
STRING | ORUFI01G41780.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0865800-00 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA01G43090.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 2e-29 | Dof family protein |