PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G39670.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 718aa    MW: 75930.2 Da    PI: 4.8633
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G39670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.6e-1498140143
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++r
  ONIVA01G39670.1  98 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLR 140
                      79***************************************97 PP
2Myb_DNA-binding521.6e-16236283148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++rw ++l
  ONIVA01G39670.1 236 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 283
                      79******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.38793156IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-1494140IPR009057Homeodomain-like
SuperFamilySSF466891.51E-1095140IPR009057Homeodomain-like
SMARTSM007178.9E-897147IPR001005SANT/Myb domain
PfamPF002491.1E-1198140IPR001005SANT/Myb domain
CDDcd001678.62E-9100140No hitNo description
PROSITE profilePS5129420.452231287IPR017930Myb domain
SuperFamilySSF466895.43E-19233301IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-20234285IPR009057Homeodomain-like
SMARTSM007172.1E-14235285IPR001005SANT/Myb domain
PfamPF002491.5E-14236283IPR001005SANT/Myb domain
CDDcd001674.12E-11238283No hitNo description
Gene3DG3DSA:1.10.10.602.8E-6288306IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MGGGGVSPGW ARSLSCSSAR SLPLRVQSTD ELGGAKEGAI GAPLGSNSAP ILSPPAAGFG  60
QSESDCEMIH QEQMDSPVAD DGSSGGSPHR GGGPPLKKGP WTSAEDAILV DYVKKHGEGN  120
WNAVQKNTGL FRCGKSCRLR GGGVSPGWAR SLSCSSARSL PLRVQSTDEL GGAKEGAIGA  180
PLGSNSAPIL SPPAAGFGQS ESDCEMIHQE QMDSPVADDG SSGGSPHRGG GPPLKKGPWT  240
SAEDAILVDY VKKHGEGNWN AVQKNTGLFR CGKSCRLRWA NHLRPPPRLP GRTDNEIKNY  300
WNTRIKRCQR AGLPIYPTSV CNQSSNEDQQ CSSDFDCGEN LSNDLLNANG LYLPDFTCDN  360
FIANSEALPY APHLSAVSIS NLLGQSFASK SCSFMDQVNQ TGMLKQSDGV LPGLSDTING  420
VISSVDQFSN DSEKLKQAVG FDYLHEANST SKIIAPFGGA LNGSHAFLNG NFSASRPTSG  480
PLKMELPSLQ DTESDPNSWL KYTVAPALQP TELVDPYLQS PAATPSVKSE CASPRNSGLL  540
EELIHEAQTL RSGKNQQTSV ISSSSSVGTP CNTTVLSPEF DMCQEYWEEQ HPGPFLNDCA  600
PFSGNSFTES TPPVSAASPD IFQLSKVSPA QSTSMGSGEQ VMGPKYEPGD TSPHPENFRP  660
DALFSGNTAD PSVFNNAIAM LLGNDLSIDC RPVLGDGIMF NSSSWSNMPH ACEMSEFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8308820.0CT830882.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA246D08, full insert sequence.
GenBankCT8308840.0CT830884.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA248K02, full insert sequence.
GenBankX983550.0X98355.1 O.sativa mRNA for transcription activator, GAMyb.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622335.10.0transcription factor GAMYB
RefseqXP_015622336.10.0transcription factor GAMYB
SwissprotA2WW870.0GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A0E0FUS10.0A0A0E0FUS1_ORYNI; Uncharacterized protein
STRINGONIVA01G39670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.31e-58myb domain protein 33