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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G36850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 526aa MW: 55420.5 Da PI: 8.6394 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107 | 1.5e-33 | 319 | 434 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+da+++++yeA+ar+ dPvyG+vg ONIVA01G36850.1 319 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVG 412 7*********************************998555559*************************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +il+lq+q++ l+ +l++l+++ ONIVA01G36850.1 413 TILALQHQVSLLQGQLSVLESQ 434 ****************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.170.270.10 | 1.4E-31 | 48 | 228 | No hit | No description |
SuperFamily | SSF82199 | 2.94E-30 | 49 | 228 | No hit | No description |
Pfam | PF05033 | 1.1E-8 | 52 | 171 | IPR007728 | Pre-SET domain |
PROSITE profile | PS50867 | 8.558 | 119 | 176 | IPR007728 | Pre-SET domain |
PROSITE profile | PS50891 | 20.628 | 318 | 435 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-37 | 319 | 432 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034968 | Biological Process | histone lysine methylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0018024 | Molecular Function | histone-lysine N-methyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MRNSATPAAV GELAELVLPW LPPQDLAAAA SASRALRAAA SSVSAGRAAD AAHGLEPHPI 60 PFDNLVDGKP YAYFLYTPFS LTPSSASASP RRAQPWGRTW ARPPGPTWPR SDLGGFPSSG 120 CACAQGACGG ARGCPCADPE AEAVGLGSEA GMGSLRECGD GCACGPSCGN RRTQLGVTVR 180 LRVVRHREKG WGLHAAEVLR RGQFVCEYAG ELLTTEEARR RQGLYDELAS VDDWPRRAAR 240 AHAPGRHGSV ARHARAHFKN PSLPPWYPRA RALALAHTHA HMHAAQPPGS SKRRGAVERP 300 ASGAGLQAEE ASSAGPGAPC GACKFLRRRC VPGCVFAPHF SGCGGSGVGA GVGGRGRERG 360 AAEFAAVHRV FGASNVAKLL SRVPAALRRD AARTVCYEAQ ARIADPVYGS VGTILALQHQ 420 VSLLQGQLSV LESQLFNLRV ALASAHPDTP PQHFVVLQPA HSAASTPNQV VVNYDDLPHA 480 VDLMDAEPAA LRGLESLQLS QPLQREEDEG HRDMNLFSDS VGQRQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-30 | 312 | 436 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-30 | 312 | 436 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242468 | 0.0 | AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0FTR9 | 0.0 | A0A0E0FTR9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G36850.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11250 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-22 | LOB domain-containing protein 20 |