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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G35960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 205aa MW: 22421 Da PI: 9.3533 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.7 | 5.3e-38 | 101 | 156 | 4 | 59 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC s++tkfCy+nny+++qPr+fCkaC+ryWt+GGalrnvPvG+grrkn+ ONIVA01G35960.1 101 APLPCPRCRSRDTKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKNR 156 5689**************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 28.751 | 103 | 157 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.1E-31 | 103 | 156 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-26 | 103 | 156 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 105 | 141 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAPAAGGFKL FGKVIMQCGV SEGTQDKAQG FVVAREKVEP EEEEEEEQRV PAAATSGQRA 60 SIKREAADRD EEQRQGGGDA AGQPTQRRLQ DSAEARAAAA APLPCPRCRS RDTKFCYFNN 120 YNVNQPRHFC KACHRYWTAG GALRNVPVGA GRRKNRPLGP LAVAHHHHHH RAAAGFVLGF 180 PNPSSPTSPS PVYTDRWPVT PDRPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071083 | 0.0 | AK071083.1 Oryza sativa Japonica Group cDNA clone:J023076F14, full insert sequence. | |||
GenBank | AP003409 | 0.0 | AP003409.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1131G08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630447.1 | 1e-150 | dof zinc finger protein 5 | ||||
Swissprot | Q5JLR7 | 1e-151 | DOF5_ORYSJ; Dof zinc finger protein 5 | ||||
TrEMBL | A0A0E0FTE3 | 1e-149 | A0A0E0FTE3_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G35960.1 | 1e-150 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6495 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34140.1 | 3e-33 | Dof family protein |
Publications ? help Back to Top | |||
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