PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G34990.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 387aa    MW: 40694.6 Da    PI: 6.4449
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G34990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.2e-18264298135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  ONIVA01G34990.1 264 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 298
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.3E-7115347IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.453258294IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-18258308IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.4E-15258295IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.24E-15260321No hitNo description
CDDcd002021.58E-14263314No hitNo description
PROSITE patternPS003440264289IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15264298IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEVTAEFGGA YYGGAAGREK KALQQGCGDH FAVDDLLVLP YDEEDETTRE GEATGGKEEA  60
AGFGNASADS STITALDSCS NSFGLADGDF PGELCEPYDQ LAELEWLSNY MNEGDDAFAT  120
EDLQKLQLIS GIPSGGFSTA SVPSAQAQAA SAAASMAVQP GGFLPEAPVP AKARSKRSRA  180
APGNWSSRLL VLPPPPASPP SPASMAISPA ESGVSAHAFP IKKPSKPAKK KDAPAPPAQA  240
QLSSVPVHSG GSAPAAAAGE GRRCLHCETD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP  300
EYRPAASPTF MVSKHSNSHR KVLELRRQKE MYQQTPHHHQ PQVAAAGGVG SLMHMQSSML  360
FDGVSPVVSG DDFLIHHHLR TDFRPPI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218960.0AK121896.1 Oryza sativa Japonica Group cDNA clone:J033105E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631175.10.0GATA transcription factor 12
TrEMBLA0A0E0FT210.0A0A0E0FT21_ORYNI; GATA transcription factor
TrEMBLA2WUZ90.0A2WUZ9_ORYSI; GATA transcription factor
STRINGONIVA01G34990.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-49GATA transcription factor 12