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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G28750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 242aa MW: 24948.8 Da PI: 7.0078 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.5e-20 | 124 | 158 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ ONIVA01G28750.1 124 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 158 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 7.13E-15 | 117 | 159 | No hit | No description |
SMART | SM00401 | 4.4E-21 | 118 | 175 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-17 | 118 | 158 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 14.404 | 118 | 154 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.43E-13 | 123 | 155 | No hit | No description |
Pfam | PF00320 | 5.5E-18 | 124 | 158 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 124 | 149 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MLHEAAPCTC GLLYGSCGGG CSLLFPAGAP GDHHHHHYYK QYCGAGDGEY PDVPYGGGGS 60 VDCTLSLGTP STRRAEAAVA GLPWDQSSLQ PSCNGRQEMS GAAAPRTEPS GGAGAAAASA 120 PRRCANCDTT STPLWRNGPR GPKSLCNACG IRYKKEERRA AAAAVAPTAL ASDGGVEYAY 180 GYPRQQQQWG CYGPAVAKAA SFGMFGDAAG EDGPCLPWGL GVMPSSPAFG AVREMPSLFQ 240 YY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00110 | ampDAP | Transfer from AT2G18380 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003284 | 0.0 | AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638887.1 | 1e-174 | GATA transcription factor 20 | ||||
TrEMBL | A0A0D9YCS4 | 1e-174 | A0A0D9YCS4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FQK2 | 1e-174 | A0A0E0FQK2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N0B2 | 1e-174 | A0A0E0N0B2_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WTH1 | 1e-174 | A2WTH1_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM01G29320.1 | 1e-174 | (Oryza glumipatula) | ||||
STRING | ORUFI01G28370.1 | 1e-174 | (Oryza rufipogon) | ||||
STRING | ONIVA01G28750.1 | 1e-174 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18380.1 | 1e-26 | GATA transcription factor 20 |